Protein Info for HMPREF1078_RS06755 in Parabacteroides merdae CL09T00C40

Annotation: membrane protein insertion efficiency factor YidD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 73 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details PF01809: YidD" amino acids 8 to 72 (65 residues), 108 bits, see alignment E=8e-36 TIGR00278: putative membrane protein insertion efficiency factor" amino acids 13 to 73 (61 residues), 85.8 bits, see alignment E=7e-29

Best Hits

Swiss-Prot: 94% identical to YIDD_PARD8: Putative membrane protein insertion efficiency factor (BDI_3056) from Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / CIP 104284 / JCM 5825 / NCTC 11152)

KEGG orthology group: K08998, hypothetical protein (inferred from 94% identity to pdi:BDI_3056)

Predicted SEED Role

"Protein YidD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (73 amino acids)

>HMPREF1078_RS06755 membrane protein insertion efficiency factor YidD (Parabacteroides merdae CL09T00C40)
MKRFFTFLLLLPVYFYKYCISPMTPASCRYTPTCSEYAVQALKKHGPVKGLYLAVKRILR
CHPWGGSGYDPVP