Protein Info for HMPREF1078_RS06440 in Parabacteroides merdae CL09T00C40

Annotation: glycosyl hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1037 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF17132: Glyco_hydro_106" amino acids 212 to 587 (376 residues), 65.3 bits, see alignment E=2.1e-22

Best Hits

Predicted SEED Role

"predicted alpha-L-rhamnosidase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1037 amino acids)

>HMPREF1078_RS06440 glycosyl hydrolase (Parabacteroides merdae CL09T00C40)
MNTQRIIKNFIYTVAGGILSLGTTGCSGNKAETTDSFSTLEAQFSNPSSEYRTAPFMVWN
GKVTEIEIDRMLKDFKDAGCGGAFIHPRPGMITEYMSDEWYSLYRYAVDKGKEMGLDIWI
YDENSYPSGFAGGHVPEDMPESYNQGQGLELTKTDLLPDKTDEYFIILKKEGDKWTDITN
ALSQHKKAKGEYYLYKKTYLGKSDWYGGYSYVDLLVPGVTEKFIDLTMKGYEKTIKDEFG
KSVFGIFTDEPNISSPGGLRWTPDLFEVFRKQWGYDLKPLLPLLDEETGNWKQVRHNYME
TLLQMFVDRWSKPWHHYCETNNLKWTGHYWEHGWPQMNDGPDNMAMYAWHQVPAIDMLFN
QFDETNPQAQFGNIRAVKELRSAANQTGCNRTLSETYGGGGWDETFKDFKRLGDWEYALG
VNFMNQHLAHMTLTGARKYDYPPVFTYHSPWWPDYRELNDYYGRLSFVMSKGIQKNDILV
LEPNSTLWSYYVHAGSSPKLMEIGTNFQAFVTTLEKNQVEYDLGSENIIKDLGKVENGRF
IVGNASYSTVVLPPMMETLNKPTFNLLQQFVEQGGQIITFSAPTRIDGAVNDELAGLLTG
TTVTSLPELSKDVIARYFSSDNFRITFNSGNLYHHRRRFADGELVFLVNSSMDEVVDGTL
STQGKAMLEMDALNGEIYTYPSSKEKGILSTSFRIEPAGSLLLYCSDKNPKNYPERPGKA
GSSPVTATSRTTVSRLRDNALTIDFCDVTVKGKTYKKQHFSRAADIAFKAHGFTNGNPWN
TSVQYKRNILDRDHFKDGGFTASYHFTVNDAFDYSGIKLVSERPELFTVKINGNLVNALP
GEWWLDRSFGVYPIGGQVKKGSNTVELSINPMRIFAEIEPVYIIGNFSVVPEQEGWSIGA
PQESFTLGSWKEQKQPFYSWDMSYSKEYTLDDLTGRYAVKLNKWNGTVAEVYVNGQKAGM
IAFDPWQLDVTSYLKEGSNTIDVHVIGSLKNLLGPHYRNPAPGLASPWHWKNVDKPISGK
EYQMMDYGLMEDFELIH