Protein Info for HMPREF1058_RS14995 in Phocaeicola vulgatus CL09T03C04

Annotation: AhpC/TSA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 331 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF14289: DUF4369" amino acids 27 to 119 (93 residues), 74.5 bits, see alignment E=2.5e-24 PF08534: Redoxin" amino acids 194 to 321 (128 residues), 69 bits, see alignment E=1.2e-22 PF00578: AhpC-TSA" amino acids 195 to 313 (119 residues), 81.2 bits, see alignment E=1.9e-26 PF13098: Thioredoxin_2" amino acids 218 to 317 (100 residues), 32.2 bits, see alignment E=3.5e-11 PF13905: Thioredoxin_8" amino acids 219 to 310 (92 residues), 64.9 bits, see alignment E=2.1e-21 PF00085: Thioredoxin" amino acids 220 to 264 (45 residues), 33.4 bits, see alignment 1.1e-11

Best Hits

KEGG orthology group: None (inferred from 99% identity to bvu:BVU_2199)

Predicted SEED Role

"FIG00414623: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I9A427 at UniProt or InterPro

Protein Sequence (331 amino acids)

>HMPREF1058_RS14995 AhpC/TSA family protein (Phocaeicola vulgatus CL09T03C04)
MKRMVNVLFAGVLAMTVLSCGEEKKGYTLHGEISDVKNGMVYLKKYQDKSFIAVDSAVIT
DGTFKFEGVCTEPLAYGLTTFRDSKRPLVFFLDNEKMQLKMNESEKILTVTGSAINDLYA
QNAPLTRQDGYSIDSLVAVHPASAVTPYFIVKDFAYKLNLEEMKALRAKLDASLDETMYV
SQIDGFIKRMEDIQVGAVAPDFTLPDVDGNPVTLSGLRGKYVLIDFWASWCPDCRKENPN
IVAAWNKYKDKNFTILGVSLDRKKEPWLAAIEKDQLAWTHVSDLKDWKSDAAVQYAIRWI
PMNFLLDPNGVILAVGLEGEALQQKLDEVLK