Protein Info for HMPREF1058_RS11130 in Phocaeicola vulgatus CL09T03C04

Annotation: family 43 glycosylhydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF04616: Glyco_hydro_43" amino acids 30 to 304 (275 residues), 163.3 bits, see alignment E=1.7e-51 PF00754: F5_F8_type_C" amino acids 334 to 444 (111 residues), 62.6 bits, see alignment E=8.6e-21 PF22633: F5_F8_type_C_2" amino acids 348 to 434 (87 residues), 59.8 bits, see alignment E=6.6e-20 PF13385: Laminin_G_3" amino acids 657 to 796 (140 residues), 52.9 bits, see alignment E=9.5e-18

Best Hits

KEGG orthology group: None (inferred from 99% identity to bvu:BVU_1123)

Predicted SEED Role

"FIG00406145: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I9UC62 at UniProt or InterPro

Protein Sequence (800 amino acids)

>HMPREF1058_RS11130 family 43 glycosylhydrolase (Phocaeicola vulgatus CL09T03C04)
MNKIRLVVASLLLGAATGFAQKPFNASGTGNPIIPGYFADPTVKKFGDTYYMYATTDGSG
AGFGPAQVWTSKDFVNWTLMPMNWPDSHWIWAPDVMQHTDGNYYYFYCQPCMIHCGVSET
PRGPWKNILGESEAVLVPDRFVTNAITLDGQTFVDDDGSVYLYWGTWGIYKGFGCGAGKL
ASDMKSFTETCLIPNTEATDFFEAPFVMKRKGIYYFMYSSGSCHDHTYRVQYATSDKPMG
PYTYRGCILETNADGTIHGPGHHSILKEGNEYYMVYHRHDNPHSNRGFHRQLCVDRMEFA
EDGSIKPLIPTHDGIGALASSVVKSKNLALGAKVRASSFYDAGFRPEYAVDDNNGTLWRP
RGMGQEWIEVDLGVARQIQTIWTQFEYGTQFYQYLIETSVDGKHWSVFADKRNNRLAGSP
MVDFGKVKARYVRLTFTGGQKNGFGGAVWNLKIFDGVEASAPQQWLGLTAADWNGREWQN
NEGMLGGAFTLKEGSARTQRIGGRDALVLEPGTTLEYSHPLLSSSKEHTVSGLVYRSGKW
QSYEAESCLSSGSITLHSSTEPLVITNFRYYNWKQEAAEKAYDAETDIVRLPVADQQKHG
LVVSLSADDFTVNDTVPYLENRGVKGYFEARKLPLVVKEVKGKKAFHFEGTQVYTSSFML
PATLQDNAPYTLEAWVLNDSISENECVADFTTSHDELEKIMLVNGTEPRCGVINHYGWYE
DAGYKDMKELAGKWQHIYICFDGRMEQVYINGKLVSEKDIQLLVKPSQFITLGRNAEGDW
PFTGYLHSLKLWDEYLPLKE