Protein Info for HMPREF1058_RS10810 in Phocaeicola vulgatus CL09T03C04

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 884 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF13715: CarbopepD_reg_2" amino acids 112 to 197 (86 residues), 52.3 bits, see alignment E=7.3e-18 PF07715: Plug" amino acids 231 to 308 (78 residues), 33.3 bits, see alignment E=9e-12 PF00593: TonB_dep_Rec_b-barrel" amino acids 396 to 845 (450 residues), 81.4 bits, see alignment E=2e-26

Best Hits

KEGG orthology group: None (inferred from 100% identity to bvu:BVU_1058)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I9J0F1 at UniProt or InterPro

Protein Sequence (884 amino acids)

>HMPREF1058_RS10810 TonB-dependent receptor (Phocaeicola vulgatus CL09T03C04)
MMQFHSKFSFLLLLCLMHICIEAKGTEHDEPLVTLDMKQTPIRKVLAEITRQTGVTFSYE
SSLTKHLLPIDITITAQPLSHCLRILFQKLPVEYIQSGKYIILKKKQKNIVISGFIRDKS
SSESLIGASIYDAKSHQGTTSNADGFFSLTLEAGNDVYLNISYVGYDSFHRSFTQLEQDT
LLPVLLNSHQQLAEVVVTGEYTSSPLVQTSDMGHTRLNKDLIQQTPVLFGEADIIKTLQT
LPGVSAGTAGLAGMYVRGGNGDDNLYMIEGNPLYQINHVGGLFSSFNAEAVKDVEFFKSA
FPARYGGRLSSVVDIHTKDGNMKEYHGSAMLGLTSGSLNLEGPLVKDRTSFNFALRRSWI
DALSAPTIAIWNATRNKGETQIVARYAFTDMNFKLNHQFNDRSRGYAGLYWGNDFLKGGE
KREGDNGYESRNTGRLRWGNIMAFTGWSYVFNNQLFGNVNAAFTHYSSTLKGDYYQGTEA
NYVSQESSTRNRIDDLSIRANFDFRPNASHQLHFGTHYIYHRFHPVDEKSHFSNGMTTQT
RQNNDTALPAHELGIYMEEDWKMNKRIRLNAGVHLGLYTIDGKTYTSLEPRFSSRFLINP
QLSLKASYTRMSQYVHQVNESYINLPTDTWIPVSRKLKPMQSDQLAVGAYYTTGNKIYSF
SIEGYYKWMKHLMDYKDNYQFLPPSTSWEDKLTQGKGRSYGVELIARKEKGKITGWAGYT
LSWNDRQFTEINKGKRFPAKFDNRHKFNIIANWKIKPKLELTGSWTYATGNRLTVSFENY
QAVSPQHPFPGGSLVPPYIDPGGLDYYTERNNFQLPAYHRLDLGINIYRPKKKNRMGIWN
ISIYNVYSYMAPVSIRKGWWYNNDCFYTLGIVPIIPSVSYTYKF