Protein Info for HMPREF1058_RS10530 in Phocaeicola vulgatus CL09T03C04

Annotation: arabinan endo-1,5-alpha-L-arabinosidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 511 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details PF04616: Glyco_hydro_43" amino acids 71 to 372 (302 residues), 122.9 bits, see alignment E=1.7e-39 PF16369: GH43_C" amino acids 387 to 507 (121 residues), 52.7 bits, see alignment E=5.3e-18

Best Hits

KEGG orthology group: None (inferred from 97% identity to bvu:BVU_1002)

Predicted SEED Role

"FIG00407403: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I9UA86 at UniProt or InterPro

Protein Sequence (511 amino acids)

>HMPREF1058_RS10530 arabinan endo-1,5-alpha-L-arabinosidase (Phocaeicola vulgatus CL09T03C04)
MKQQFFPQRLFMDMKRLIINRLVGLGLLVVGALVSCNVPTAFVPVPSPNPWGDDYTALSS
MENYKQWGTYNVHDPACKKIGDTYYMYSTDAIFAENRKEAEEKNVPLGFIQVRKSKDLVH
WNFVGWAFPEIPAPAIEWVHSQAEGKGATNIWAPFLMPYQGIYRLYYCVSAFGRNTSYIG
MAESDSPEGPWIQKGCVVKTGEGDAMNAIDPSVIEDPETGKWWMHYGSYFGGLYCVELNP
ETGMTMQPEDHGHLIARRANYRKDNLEAPEIMYQPELGKYYLFTSYDPLMTTYNVRVAYS
DSPEGPFVDFYGEDIKDTTNNVPILTAPYRFENHPGWAGTAHCGLIDAGDGRYFMAHQGR
LSPQNQLMDLHVREVFFTVNGWPVVSPERYAGTAPRSFTKEDLAGEWEIIRLQEPPLERS
LEAGQIMWGEGDLRNGEQALSARVVLEADGSVGDATWDFNVKKQLLTIKTATEDINNLII
FAGHDWENETETILFTGLDAQGHSVWGKRIN