Protein Info for HMPREF1058_RS08980 in Phocaeicola vulgatus CL09T03C04

Annotation: SusC/RagA family TonB-linked outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1133 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF07660: STN" amino acids 55 to 104 (50 residues), 41.7 bits, see alignment (E = 2.1e-14) TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 119 to 1133 (1015 residues), 696.3 bits, see alignment E=9.1e-213 PF13620: CarboxypepD_reg" amino acids 119 to 190 (72 residues), 44 bits, see alignment 6e-15 PF13715: CarbopepD_reg_2" amino acids 120 to 201 (82 residues), 56.3 bits, see alignment 6.8e-19 PF07715: Plug" amino acids 213 to 333 (121 residues), 70.6 bits, see alignment E=3.8e-23 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 309 to 339 (31 residues), 60.7 bits, see alignment (E = 8.9e-21) PF00593: TonB_dep_Rec_b-barrel" amino acids 529 to 878 (350 residues), 90.7 bits, see alignment E=5e-29

Best Hits

KEGG orthology group: None (inferred from 100% identity to bvu:BVU_0623)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I8ZUB1 at UniProt or InterPro

Protein Sequence (1133 amino acids)

>HMPREF1058_RS08980 SusC/RagA family TonB-linked outer membrane protein (Phocaeicola vulgatus CL09T03C04)
MKGNQLMRKPKLLRALLILLFVAAPIQWTRAQIVLSTPKTTLGAVIKNIKSQSNYQFFYD
DKLAEMPVNAIDVKNGSLQSVLDAALQGKGITYKIEDNIVYLSASGEPQTPQQTGQEHTV
TGTVVDATGEALIGVNVQVKGNPTAGTITDFEGNYSLSVPGNGEIVFSYIGYRSETLKPD
GKNVLNVTMQEDTQQIGEVVVTALGIKREKKMLGYAVQELKSDELNKTGDPSVTSALQGK
VAGLQMNTSATGLGGSTKITIRGNSSLTDNNQPLWIVDGVPFSDNTTSDASRYGGVDRGS
ASMDINPDDIESISVLKGPNAAALYGSRAGNGVILITTKKGSKKDGFGIRYSGNFTWTAI
GETLDMQRRYGQGHIDTKDAKTAVYDKTDSGSWGPVLDGSMKEAWNGETYAYSNYGDKLK
DYFDTGFSHTHNVSISNGTEKSHFRTSFGYSDNDGVFPTESLSRVNADLNAGTELNKWVS
MDGKISLSRTKADNRPLYGDYGAISQLMRIPNNVRLDDLKQYSDETHAHVNWTGPTASIR
NPYYVLHQRQNSDERWRAFGYYSMKINFTDWLHLSAKYAFDYYRTRVQSTNAGDGINGEA
NTSMITNDSMDRSEENFFESNAEVILMGDRQLTDNFRLGFNVGGNFMYQRSETLGVGVGN
MVDKGNWMLNAANLLRTGSEDGYKRAMNSVFGSVQMAWKEYLSLDLTARNDWSSTLPSGN
NSFFYPSANLSFVVSDFLRSIDKPLPSWVTFAKARLSAAQVGKDTSPYQLYNTYSFKFDN
GVLTPTKDNVKMNDQLKPEIATSYEAGLDMKFLNNRLGFDFTYYYSKTKNQIMKVPAAAP
WSGGQWVNAGMVTNQGVELMLYSTLVETKDFAFDLNVNMAHNVSKVKELAPEENVNYMFF
NGDGNFPVKVGTRAGHKLGEIYATSLYKRNENGDIIVNENGLPMTVTNESEYVNKPIGNI
QPKLTMSVSPTFTYKGITLSALFDMKFGGDIFSYSEMLATGNGLAKRTLNRGEENNYMMV
FPGVTESGEVNTKQVSASEYYGALQAEDFIYDASFIKLKELSIGYSFPSSMLKKTPVNSL
NVSFVARNLCYLMKHTPGTSPEGGYDTTMFSQAIDYASLPFTRTFGISINLGF