Protein Info for HMPREF1058_RS08790 in Phocaeicola vulgatus CL09T03C04

Annotation: Na+:solute symporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 627 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details amino acids 45 to 70 (26 residues), see Phobius details amino acids 80 to 99 (20 residues), see Phobius details amino acids 120 to 145 (26 residues), see Phobius details amino acids 175 to 198 (24 residues), see Phobius details amino acids 205 to 224 (20 residues), see Phobius details amino acids 265 to 285 (21 residues), see Phobius details amino acids 306 to 335 (30 residues), see Phobius details amino acids 367 to 394 (28 residues), see Phobius details amino acids 415 to 434 (20 residues), see Phobius details amino acids 440 to 458 (19 residues), see Phobius details amino acids 470 to 488 (19 residues), see Phobius details amino acids 493 to 513 (21 residues), see Phobius details amino acids 561 to 581 (21 residues), see Phobius details amino acids 587 to 606 (20 residues), see Phobius details PF00474: SSF" amino acids 36 to 477 (442 residues), 101.6 bits, see alignment E=2.4e-33

Best Hits

KEGG orthology group: None (inferred from 100% identity to bvu:BVU_0580)

Predicted SEED Role

"Predicted sodium-dependent mannose transporter" in subsystem Mannose Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I8ZUI1 at UniProt or InterPro

Protein Sequence (627 amino acids)

>HMPREF1058_RS08790 Na+:solute symporter (Phocaeicola vulgatus CL09T03C04)
MKLHIVDILIICAYLMVIVAIGLFLKKKAAKNMDSYFLGGKSLPFYMLGLSNASGMFDIT
GTMLMVYWAFAYGFKSLWIPWLWPVFNQIFLMVYLSVWLRRSNVLTGAEWIKTRFGQGRG
ATLSHTIVIVFALLSVLGFLSYGFIGIGKFMEIFFPWEVVSQYVPWDIPVQYVPHFYGIF
FTAIATFYVMLGGMLSIVWTDVVQFLIMTVAGVVIAIIGMNMVAPEMIREFVPAGWESPF
FGWTLDIDWSERMSLLTERMADEPYSLMGVFVMMALLKGIFMSMAGPAPNYDMQKILSCK
SPKEAALMSGSVSVILLIPRYLMIMGFALLAIYFFKVDGGLEQMTAVHTDFETILPHLIT
KYVPVGLAGLLLAGLLSAFMSTFASTVNAAPAYVVNDIYLKYINPRASVRTQIRASYLVS
VLVVVISTVMGFFLKDINEIFQWIVGALFGGYIAANVLKWHWWRFNGEGYFWGMTSGVVA
AIVMKFTVPDSLVLYFFPVLFGISLVGCIVGTYSAPPTDEETLVNFYIRVRPWGWWKPVA
AKAVARYPQVTRNRHFKRDMFNVAIGIVWQCCLTIVPMYLVVRGTGGLIASVLLLVVTTV
VLKYTWYRPLCREEKEYDELMKRIGMD