Protein Info for HMPREF1058_RS07975 in Phocaeicola vulgatus CL09T03C04

Annotation: family 10 glycosylhydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 499 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF02638: GHL10" amino acids 29 to 334 (306 residues), 242.6 bits, see alignment E=2.9e-76

Best Hits

KEGG orthology group: None (inferred from 100% identity to bvu:BVU_0082)

Predicted SEED Role

"COG1649 predicted glycoside hydrolase" in subsystem Predicted carbohydrate hydrolases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I9U6U2 at UniProt or InterPro

Protein Sequence (499 amino acids)

>HMPREF1058_RS07975 family 10 glycosylhydrolase (Phocaeicola vulgatus CL09T03C04)
MRAKTILLLLIALLFTSVVSAQTRYPKREFRGAWIQCVNGQFQGMPTEKIQRLLINQLNS
LQGAGINAIIFQVRAEADALYKSSYEPWSRFLTGVQGRVPSPYWDPMQFMIDECHKRGME
FHAWINPYRAKTKGTTALSPIHPYNKNPERFVNYAGQLYFDPALPENRKYICKIVRDIVT
RYDVDAIHMDDYFYPYPNPGEDFPDHVSFAQYGRGYSNKADWRRDNVNVLIKEIHETVRE
CKPWVKFGVSPFGIYRNKKNDPNGSDTRGLQNYDDLYADVLMWINNGWVDYNIPQIYWEI
GHPAADYDNLIHWWAKHAASRPLFIGQDVMRTVNKADARNPLQNQMPAKMKLQRSLPTVQ
GSCQWYAAAVVDNAGNYRTMLEKEYHRYPALIPESPFMDDKAPGKVKKVKMVWTYEGPVL
FWTAPKAKDEMDKAVQYVVYRFDKKEKVNLDDASHIVAITRDHFYPLPYNDGKTKYQYVV
TALDRLHNESKGTKKKVKL