Protein Info for H281DRAFT_06322 in Paraburkholderia bryophila 376MFSha3.1

Annotation: LPS-assembly lipoprotein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 184 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF04390: LptE" amino acids 47 to 156 (110 residues), 51.4 bits, see alignment E=8.6e-18

Best Hits

KEGG orthology group: K03643, LPS-assembly lipoprotein (inferred from 89% identity to bug:BC1001_3022)

Predicted SEED Role

"LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B)" in subsystem KDO2-Lipid A biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MG74 at UniProt or InterPro

Protein Sequence (184 amino acids)

>H281DRAFT_06322 LPS-assembly lipoprotein (Paraburkholderia bryophila 376MFSha3.1)
VTRRSFFLTLACSVLMLSACGFQLRGQQDYAFKRLFVAGGSASANARLARMVQGGSDTVV
VNSVTSADATLQITEGRGYSTLTLNSLGVVEEYQLNLSMNYSLIGKDGTVLIPPSVIALN
RAMTYSDKYSQAKAAESDILFADMENDAIDQLTRRLSSVRSLHPAPGEQVPAVVPRAPLP
PPPL