Protein Info for H281DRAFT_06102 in Paraburkholderia bryophila 376MFSha3.1

Annotation: peptide/nickel transport system permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 304 transmembrane" amino acids 40 to 62 (23 residues), see Phobius details amino acids 104 to 131 (28 residues), see Phobius details amino acids 151 to 180 (30 residues), see Phobius details amino acids 223 to 225 (3 residues), see Phobius details amino acids 227 to 249 (23 residues), see Phobius details amino acids 270 to 291 (22 residues), see Phobius details PF12911: OppC_N" amino acids 32 to 78 (47 residues), 53.3 bits, see alignment 1.9e-18 PF00528: BPD_transp_1" amino acids 120 to 301 (182 residues), 106.2 bits, see alignment E=1.8e-34

Best Hits

Swiss-Prot: 46% identical to DPPC_ECOLI: Dipeptide transport system permease protein DppC (dppC) from Escherichia coli (strain K12)

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 98% identity to bgf:BC1003_4969)

MetaCyc: 46% identical to dipeptide ABC transporter membrane subunit DppC (Escherichia coli K-12 substr. MG1655)
ABC-8-RXN [EC: 7.4.2.9]

Predicted SEED Role

"Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.9

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MMX2 at UniProt or InterPro

Protein Sequence (304 amino acids)

>H281DRAFT_06102 peptide/nickel transport system permease protein (Paraburkholderia bryophila 376MFSha3.1)
MNAARLTWKQWLLTDTPASRKQAALGLAYRRWRRFAGNPLSVFGFAILMVLVIVAIIGPW
IAPHDPLRQVLSDRLLPPGSPSHWLGTDQLGRDILSRIIYGSRLTLSIAILVVVVVVPIG
LMIGTTAGFFGGWVDNVLMRVTDIALAFPKIVLALAFAAALGPGVINAVIAISITAWPAY
ARLARAETLRLVQADFIQVARLQGASNLRILLRYVVPLCMSSVIVRATLDMAGIILTVAG
LGFLGLGAQPPSPEWGFMVASGRNVLLDSWWVATIPGFAILLVSLAFNLLGDGLRDVFDP
RHGD