Protein Info for H281DRAFT_06061 in Paraburkholderia bryophila 376MFSha3.1

Annotation: membrane protein required for colicin V production

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 164 transmembrane" amino acids 7 to 22 (16 residues), see Phobius details amino acids 29 to 53 (25 residues), see Phobius details amino acids 65 to 90 (26 residues), see Phobius details amino acids 103 to 125 (23 residues), see Phobius details PF02674: Colicin_V" amino acids 5 to 144 (140 residues), 116 bits, see alignment E=7e-38

Best Hits

KEGG orthology group: K03558, membrane protein required for colicin V production (inferred from 97% identity to bpy:Bphyt_6836)

Predicted SEED Role

"Colicin V production protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MMT9 at UniProt or InterPro

Protein Sequence (164 amino acids)

>H281DRAFT_06061 membrane protein required for colicin V production (Paraburkholderia bryophila 376MFSha3.1)
MFTAFDYAVMAVIGLSALRGTWRGFLSEVFGLIGWIAAFFIACRFVGYVVPYIPSTWPGG
ALTQWLLAFALVAIGVVLVASVLNALLGRIVQATGLSGVDRSLGLMFGLVRGVVLVLILV
ALAGLTELPQQEFWRNALLRPYAVEGVHVMKPLLPETLAAYVRV