Protein Info for H281DRAFT_05022 in Paraburkholderia bryophila 376MFSha3.1

Annotation: two component transcriptional regulator, LuxR family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 228 PF00072: Response_reg" amino acids 21 to 131 (111 residues), 90.2 bits, see alignment E=1.5e-29 PF08281: Sigma70_r4_2" amino acids 149 to 200 (52 residues), 27.5 bits, see alignment E=2.9e-10 PF00196: GerE" amino acids 156 to 211 (56 residues), 71.2 bits, see alignment E=6.7e-24

Best Hits

Swiss-Prot: 54% identical to NODW_BRADU: Nodulation protein W (nodW) from Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110)

KEGG orthology group: None (inferred from 79% identity to bam:Bamb_5742)

Predicted SEED Role

"DNA-binding response regulator, LuxR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MCF2 at UniProt or InterPro

Protein Sequence (228 amino acids)

>H281DRAFT_05022 two component transcriptional regulator, LuxR family (Paraburkholderia bryophila 376MFSha3.1)
MSDSRTFRTAASSTGRESRVVYIVDDDDLVRGALVGLLRSIDLEVHAFASTEEFLAAPKS
ANPSCLVLDVRLRGQSGIAFQKSLSETGQPHMPIVFMTGHGDIAMTVKAMKAGAMDFLSK
PFRDQDMIDAVVAALDSDAKRLEADRSLHEVRACWESLTPREREVLEHVAAGLMNKQIAA
NMGIAEITAKIHRGQAMRKMNTRSVAELVRKMQALGIAKLGGIGAAQQ