Protein Info for H281DRAFT_04332 in Paraburkholderia bryophila 376MFSha3.1

Annotation: transporter, UIT6 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 475 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 37 to 57 (21 residues), see Phobius details amino acids 69 to 90 (22 residues), see Phobius details amino acids 101 to 121 (21 residues), see Phobius details amino acids 133 to 155 (23 residues), see Phobius details amino acids 167 to 189 (23 residues), see Phobius details amino acids 201 to 229 (29 residues), see Phobius details amino acids 259 to 278 (20 residues), see Phobius details amino acids 296 to 316 (21 residues), see Phobius details amino acids 333 to 363 (31 residues), see Phobius details amino acids 374 to 398 (25 residues), see Phobius details amino acids 408 to 431 (24 residues), see Phobius details amino acids 452 to 474 (23 residues), see Phobius details PF16980: CitMHS_2" amino acids 33 to 475 (443 residues), 669.6 bits, see alignment E=2e-205 PF03600: CitMHS" amino acids 130 to 401 (272 residues), 40.8 bits, see alignment E=1.6e-14

Best Hits

KEGG orthology group: None (inferred from 90% identity to bug:BC1001_2567)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (475 amino acids)

>H281DRAFT_04332 transporter, UIT6 family (Paraburkholderia bryophila 376MFSha3.1)
MTRRAVPTCMVLVAALTLTSWPQVACAATLEGASLSALWGLPFAGMLLSIALFPLVAPTF
WHHHFGKIAAAWALVFLVPFALAFGWGIALGTLVHALLEEYIPFIVLLTALYTVAGGICV
RGNLHGTPRLNTTILALGTLLASVMGTTGAAMLLIRPLLRANDNRRHVVHVVVFFIFLVA
NAGGSLSPLGDPPLFLGFLQGVGFFWTTTHLALPMLFVCGVLLTAFYFLDSHYFHQREEE
RSRFLDPTPDSPLGIDGKVNFLLLGAVVGLVLMSGLWKPGVSFDVLGTHVDLQNAVRDVA
LVVVMLLSLALTPRAARKGNDFNWAPIEEVAKLFAGIFVTIAPVITILRAGEAGAFAGVV
HLVNDSAGRPHDAMYFWATGLLSSFLDNAPTYLVFFNLAGGDASSLMTTGATTLAAISAG
AVFMGANSYIGNAPNFMVKAIAESRGVRMPSFFAYLGWSGAVLLPLFLVTGWLFF