Protein Info for H281DRAFT_03892 in Paraburkholderia bryophila 376MFSha3.1

Annotation: Uncharacterized membrane protein, predicted cobalt tansporter CbtA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 264 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 81 to 105 (25 residues), see Phobius details amino acids 117 to 135 (19 residues), see Phobius details amino acids 155 to 172 (18 residues), see Phobius details amino acids 184 to 205 (22 residues), see Phobius details amino acids 226 to 247 (22 residues), see Phobius details PF09490: CbtA" amino acids 4 to 247 (244 residues), 250.7 bits, see alignment E=9.4e-79

Best Hits

KEGG orthology group: None (inferred from 85% identity to bgf:BC1003_4411)

Predicted SEED Role

"Predicted cobalt transporter CbtA" in subsystem Coenzyme B12 biosynthesis or Transport of Nickel and Cobalt

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (264 amino acids)

>H281DRAFT_03892 Uncharacterized membrane protein, predicted cobalt tansporter CbtA (Paraburkholderia bryophila 376MFSha3.1)
MVGKLLLRGMLAGIAAGLLTFAFARVAGEPQVNQAIAFEENAGDGAGAMHEHEHAGAAAG
ADAHEQAHEQELVSRDTQAGLGLLTGVVTYGAAFGGLFSLVFAYAYGRVGAMSARALSAW
LALGAFVALVIVPNIKYPANPPAVGDPETIGTRTGLFFLMIAISLTAMVFSLKVRRRAAM
KLGAWNGSIVAGLVFIAIIAAVQMSMPVIDETPAGFPAALLWKFRVAALGMQAIMWATIG
LLFGAIVERSSFMRVGNRTATRSA