Protein Info for H281DRAFT_03633 in Paraburkholderia bryophila 376MFSha3.1

Annotation: Outer membrane protein (porin)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 357 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF13609: Porin_4" amino acids 9 to 325 (317 residues), 155 bits, see alignment E=4.1e-49 PF00267: Porin_1" amino acids 48 to 343 (296 residues), 37.2 bits, see alignment E=2.4e-13

Best Hits

KEGG orthology group: None (inferred from 95% identity to bxe:Bxe_B0172)

Predicted SEED Role

"Outer membrane protein (porin)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MMN3 at UniProt or InterPro

Protein Sequence (357 amino acids)

>H281DRAFT_03633 Outer membrane protein (porin) (Paraburkholderia bryophila 376MFSha3.1)
VKHIIAAGLTAVCATTGAWAQSRVTLYGSLDAGIAYISNVGGHTKWIEEQGNMQPDRWGL
KGVEDLGGGLKTIFQLENGFYTNTGAFAKAGTLFNRQAFVGLSSDKIGTVTLGHQTPFSF
DVLGPLSTAYLAASWYAFHPGNIDELADTGVVPFDNSVKFRSASFNGFSVGAMMGLGNTT
NFSTGKTLSFALSYANGPFKAGATYANEHNRTPSIVTTGITNFQGVAAANYSADKVQNMG
AGASYQFGKLLVHGLYTRVKLESAGHSDTYQSYDVGANYQFTPFNSVAGGAATTTLAGHR
WTQFEIGDIYALSKSTQLYVNALYERAGSNTDAAFFTAGVSSGRNQTIILTGIHHSF