Protein Info for H281DRAFT_01582 in Paraburkholderia bryophila 376MFSha3.1

Annotation: nicotinate dehydrogenase subunit B

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1207 transmembrane" amino acids 780 to 800 (21 residues), see Phobius details PF20256: MoCoBD_2" amino acids 57 to 189 (133 residues), 75.5 bits, see alignment E=1.1e-24 amino acids 624 to 707 (84 residues), 54.7 bits, see alignment 2.3e-18 PF02738: MoCoBD_1" amino acids 334 to 569 (236 residues), 99.7 bits, see alignment E=3e-32 PF00034: Cytochrom_C" amino acids 820 to 920 (101 residues), 25.9 bits, see alignment E=4.3e-09 amino acids 977 to 1070 (94 residues), 21.7 bits, see alignment 8.8e-08 amino acids 1100 to 1181 (82 residues), 31.2 bits, see alignment 9.3e-11 PF13442: Cytochrome_CBB3" amino acids 1100 to 1179 (80 residues), 38.6 bits, see alignment 2.2e-13

Best Hits

KEGG orthology group: None (inferred from 89% identity to bug:BC1001_4280)

Predicted SEED Role

"Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16)" in subsystem N-heterocyclic aromatic compound degradation (EC 1.3.99.16)

Isozymes

Compare fitness of predicted isozymes for: 1.3.99.16

Use Curated BLAST to search for 1.3.99.16

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1207 amino acids)

>H281DRAFT_01582 nicotinate dehydrogenase subunit B (Paraburkholderia bryophila 376MFSha3.1)
MTGPDISVDRRATVPSRKQLYDAQSVLIVMRAPQAPVKPAVGQPGSRSSFVPGEPDMFLA
VRDDGSAIAFNGHVDLGTGIGTALAQIVAEELDLPLTRVSVVLGHTNETPNQGPTIASAT
MQITAVPLRHAAAQARQWLLAQAAARFGVDVEKLAVRDGMVFEQDGDNAVEKARRIGYGE
LIAGQRVELQLTTDAPLKSPHAYKIVGKSAPRVDIPAKATGELSFVHDVRVPGMLHGRVV
RPPYAGIAQGDFVGNSLLHVDEESIRDLSGIVKVVVIRDFVGIVAEREEVAQQAAKRLHV
QWKAAQPLPPLETSEEVEAALRANPAKRRDLVIDGDVDAALSQDASRTLNRTYVWPFQMH
ASIGPSCAVADYREGALKVWSGTQNPHSLRADLALLMSMDEALIDILRMDAAGCYGRNCA
DDVAADAALLSRATGAPVRAQLSREDEHAWEPKGAAQLMDVRGALSAEGELAAYDFATRY
PSNDAPTLALLLTGVLSAQPQVFEMGDRTAVPPYDYRSMRVVCDDTPPIVRASWLRGVSA
LPNTFAHESFIDELAAEAGVDPVEFRLKHLSDPRAVELVKAVAERADWQPREPRTDQPRE
EGDIARGRGIAYARYVHSKFPGFGAAWCAWVADVEVNRRSGELAVTRVVVGQDTGTMINP
DGVRHQIHGNVIQATSRALKERVTFDQNAVTSQEWGAYPILTFREVPVIDVVMMPRHGEP
PMGAGESASLPGAAAIANALYDATGVRFRKPPFTPETIRAALADAQAQDAASRRKKRWRL
GFLGAFAAGAAGWLGASAWAPPPIAPIAPPLASAFAPELVARGKLLASLGNCAVCHTARN
GVPNAGGKPLETPFGTVYSTNITPDAQTGIGSWSLEAFVRAMREGVSRDGHRLYPAFPYT
SFRNTSDDDLKALYAYLMSQTPVRFRPPETKLPFPFSARPLMAAWNGLFLGRNTFATSTT
QSAQWNRGAYLVNGLGHCSACHTPRNAFGAEKTGAAFMGGGSAEGWEAPALSSLSNSPVP
WSEDELFSYLRFGHAPLHGVAAGPMAPVVADLAALPDSDIRAMANYLASLNPVEANVDTA
AMARQYEHASAITGTPSGVGARLFDGACAACHHTGSGPQLFGAHPSLALNTNLHSATPDN
LIRVILDGIGSPARPELGTMPAYRDSFNDAQVAELVTYLRQQFAGGKPAWQDVAASVARI
RATPVAD