Protein Info for H281DRAFT_01543 in Paraburkholderia bryophila 376MFSha3.1

Annotation: putative spermidine/putrescine transport system permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 303 transmembrane" amino acids 34 to 57 (24 residues), see Phobius details amino acids 87 to 109 (23 residues), see Phobius details amino acids 118 to 140 (23 residues), see Phobius details amino acids 169 to 190 (22 residues), see Phobius details amino acids 217 to 242 (26 residues), see Phobius details amino acids 268 to 290 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 102 to 287 (186 residues), 40.9 bits, see alignment E=9.5e-15

Best Hits

KEGG orthology group: None (inferred from 94% identity to bgf:BC1003_4172)

Predicted SEED Role

"Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1)" in subsystem Polyamine Metabolism (TC 3.A.1.11.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MJY9 at UniProt or InterPro

Protein Sequence (303 amino acids)

>H281DRAFT_01543 putative spermidine/putrescine transport system permease protein (Paraburkholderia bryophila 376MFSha3.1)
MMTTAKRILQDPALIQTVATDPSARHQQREDRAMLLLLAPALFVVVVLLVVPLAWLSWQS
IWHDGGFTLVNYRRIFTGTYLDTFLMTFKLSVIVTGVTLLLGYPVAYFAASVSPRWSALI
LGMVILPFWTSVLVRTYAWLVLLQRTGLINKALLATGLVDRPVQLAYNQFGTILAMVHIL
LPFMVLPLYSAMQKIPANLSQAGASLGGSPLHVFWRVFLPLSMSGVVAGATLVFVLCLGF
YITPELMGGGKSIMVSMVVSRNVEIYNSWGAASAVSVVLLLCVFAIFYAASRVIPLEKTL
GAK