Protein Info for Ga0059261_4093 in Sphingomonas koreensis DSMZ 15582

Annotation: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 412 PF01041: DegT_DnrJ_EryC1" amino acids 33 to 402 (370 residues), 312 bits, see alignment E=6.1e-97 PF00155: Aminotran_1_2" amino acids 43 to 149 (107 residues), 21.8 bits, see alignment E=9.7e-09

Best Hits

KEGG orthology group: None (inferred from 55% identity to avn:Avin_30070)

Predicted SEED Role

"Lipopolysaccharide biosynthesis protein RffA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WIN6 at UniProt or InterPro

Protein Sequence (412 amino acids)

>Ga0059261_4093 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis (Sphingomonas koreensis DSMZ 15582)
MATAHARPATLTAPRTAVPEGGGEIRSRWPVHGEEEIAAVAAILRSGKVNSLHHGEQTHA
FEQAFAEKCNASHAIAVANGTLALELALRALGVGPGDEVVVPARSFMASASCVAAVGAIP
AFADVDPDTQTLTANTIASALTPRTRAIIVVHLAGWPAAMQEIMVLARAMGLFVIEDCAQ
AHGAVQGDFPVGACSDAAAFSFCTDKIISTGGEGGMLVLHDHALWERAWSYKDHGKSPHV
GAVIGPPGTFRWLHGSLGSNYRMTEMQAAIGLCQLAKLDGWIEARQRNAGILNAALAPLR
AVRLTLPPSSVRHAYYKYYAFVHPERLARGWTRDRIVGACIAAGVPCGTGSCPEIYREQA
FVGSPSVPLNPLPVSRTLGETSLMLPVDPTLDTAMVERMGAIVASVIASATA