Protein Info for Ga0059261_3956 in Sphingomonas koreensis DSMZ 15582

Annotation: amino acid/amide ABC transporter substrate-binding protein, HAAT family (TC 3.A.1.4.-)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 321 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF13458: Peripla_BP_6" amino acids 12 to 278 (267 residues), 59 bits, see alignment E=3.4e-20

Best Hits

KEGG orthology group: None (inferred from 48% identity to swi:Swit_2581)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WI52 at UniProt or InterPro

Protein Sequence (321 amino acids)

>Ga0059261_3956 amino acid/amide ABC transporter substrate-binding protein, HAAT family (TC 3.A.1.4.-) (Sphingomonas koreensis DSMZ 15582)
VQDKKPKRDKRQVAMLLPLSGPRAALGLSMRQAALLADSGPEITAYDTGGTAAGAALAAR
NALKAKSAMILGPVTAEEMTAAAREVAGRVPVVAFSNNSVVRAPGSWVFGITPSQVTSAI
LRYARSRGIRNVVVIDDASPWSAAAALAAGKVQGEVGIDVRVLTVTEGQPLPVAGDAPDA
VLLPGSGEAVLAAARNLKETGIQLLGTVQALDHRPAALEVLNGAWLASPDPAAFGRFAGE
YRARHGGDPGALAALAYDAGGIVKVLRGKGEISEKALLAETSYPCVTGNARFRSDGSVAR
ELAILLAGPQGYEPVAVSLGA