Protein Info for Ga0059261_3894 in Sphingomonas koreensis DSMZ 15582

Annotation: transcriptional regulator, LacI family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 348 PF00356: LacI" amino acids 9 to 54 (46 residues), 52.7 bits, see alignment 4.4e-18 PF00532: Peripla_BP_1" amino acids 89 to 285 (197 residues), 65.7 bits, see alignment E=7.6e-22 PF13377: Peripla_BP_3" amino acids 186 to 343 (158 residues), 124 bits, see alignment E=1e-39

Best Hits

KEGG orthology group: None (inferred from 67% identity to nar:Saro_1609)

Predicted SEED Role

"Ribose operon repressor" in subsystem D-ribose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1L6JGU2 at UniProt or InterPro

Protein Sequence (348 amino acids)

>Ga0059261_3894 transcriptional regulator, LacI family (Sphingomonas koreensis DSMZ 15582)
MARRKQAVTIRHVAADAGVSLQTVSRVINKEPNVRPEMAERVRASIAKLGYVPSIAAQRM
SGSRSYLIMALNDRERTIDGWRARDGTDWVDQMLLGGMLTCAEHGYRLIVELVDTHSDHI
ERELSAALAALQPDGVILTPPHSANPAILALLDDAHIGLARIGSLAEGPGFRLTMGDDIA
AGLATRHLIELGHERIGLIAGPDEYELSGWRVDGWRAAMAEAGLSIEGLLAQGDFSRQSG
RAAAPSLLEAGATAIIASNDQMTLGTLEIARERGLEVPGDLSLISFDDTPIARFHHPSLT
AVTQPIADVTARAVELIIAERGGEAAPDGPVVVFPSLTVRQSTGPRRG