Protein Info for Ga0059261_3865 in Sphingomonas koreensis DSMZ 15582

Annotation: cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein (EC 1.10.3.10)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 469 transmembrane" amino acids 15 to 38 (24 residues), see Phobius details amino acids 57 to 78 (22 residues), see Phobius details amino acids 98 to 120 (23 residues), see Phobius details amino acids 128 to 148 (21 residues), see Phobius details amino acids 189 to 211 (23 residues), see Phobius details amino acids 223 to 240 (18 residues), see Phobius details amino acids 324 to 347 (24 residues), see Phobius details amino acids 359 to 380 (22 residues), see Phobius details amino acids 409 to 432 (24 residues), see Phobius details PF01654: Cyt_bd_oxida_I" amino acids 10 to 438 (429 residues), 548.2 bits, see alignment E=5.4e-169

Best Hits

KEGG orthology group: K00425, cytochrome bd-I oxidase subunit I [EC: 1.10.3.-] (inferred from 78% identity to npp:PP1Y_AT1814)

MetaCyc: 60% identical to cyanide insensitive ubiquinol oxidase subunit I (Pseudomonas putida KT2440)
RXN-6883 [EC: 1.10.3.11]

Predicted SEED Role

"putative Cytochrome bd2, subunit I" in subsystem Terminal cytochrome d ubiquinol oxidases or Terminal cytochrome oxidases

MetaCyc Pathways

Isozymes

Compare fitness of predicted isozymes for: 1.10.3.-

Use Curated BLAST to search for 1.10.3.- or 1.10.3.11

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WHV9 at UniProt or InterPro

Protein Sequence (469 amino acids)

>Ga0059261_3865 cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein (EC 1.10.3.10) (Sphingomonas koreensis DSMZ 15582)
MFEGFDPILLARIQFAFTVSFHFVFPAFSIGLASYLAVLEGLWLKTGKQLYLDLFKFWVK
IFAVAFAMGVVSGIVMSYQFGTNWAVFSDKAGPIIGPLMAYEVLTAFFLEAGFLGVMLFG
MNKVGRGLHFASTLAVSIGTLISATWILSANSWMHTPVGFEINAAGQFVPSGSWWTIVFN
PSFPYRLAHTVIAAYLTTAFVVGAVGAWHLLKDRADPHARKMFSMAMWMAAIVAPVQIVA
GDMHGLNTLEHQPAKVMAMEGHYQSHPDGAPLILFGIPNSAEKRVDYAVEIPKASSLILK
HDANAPLAGLDTVAPQDQPPVGIVFWSFRIMVGMGMAMLCIGLWSLFARFRKRLYDWPLL
HRAALVMGPSGFVAVLAGWVTTEVGRQPFTVYGFLRTAHSASPLEAPAVGASLIAFVLVY
FAVFGFGTWYILKLMAKGAHRGEDAIDVDAPIRTAGITPGPAQRPEGKQ