Protein Info for Ga0059261_3730 in Sphingomonas koreensis DSMZ 15582

Annotation: 50S ribosomal protein L4, bacterial/organelle

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 204 PF00573: Ribosomal_L4" amino acids 16 to 201 (186 residues), 206.2 bits, see alignment E=1.8e-65 TIGR03953: 50S ribosomal protein uL4" amino acids 16 to 199 (184 residues), 203.8 bits, see alignment E=7.6e-65

Best Hits

Swiss-Prot: 74% identical to RL4_SPHWW: 50S ribosomal protein L4 (rplD) from Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273)

KEGG orthology group: K02926, large subunit ribosomal protein L4 (inferred from 77% identity to npp:PP1Y_AT16996)

Predicted SEED Role

"LSU ribosomal protein L4p (L1e)" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WHK4 at UniProt or InterPro

Protein Sequence (204 amino acids)

>Ga0059261_3730 50S ribosomal protein L4, bacterial/organelle (Sphingomonas koreensis DSMZ 15582)
VKVKVQTLDAKASGDIELNDDVFGLEPRADILHRVVTWQLWNRRETARPTRERSEVSRTG
KKFGRQKGGGTARHGDRAAPIFIGGGKAHGARKRDFNISLNKKVRALGLKMALSSHAKAG
SLIVLDGFEASKTSALKDQFAGLKVGKTALVIDGEASNGFLAARNLVGVDVLPAAGANVY
DILKHDTLVLTRAAVEKLEARFNG