Protein Info for Ga0059261_3515 in Sphingomonas koreensis DSMZ 15582

Annotation: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 413 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF12697: Abhydrolase_6" amino acids 113 to 370 (258 residues), 40.8 bits, see alignment E=6.2e-14 PF12146: Hydrolase_4" amino acids 113 to 207 (95 residues), 31.9 bits, see alignment E=1.3e-11

Best Hits

Predicted SEED Role

"Hydrolases of the alpha/beta superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WH23 at UniProt or InterPro

Protein Sequence (413 amino acids)

>Ga0059261_3515 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) (Sphingomonas koreensis DSMZ 15582)
MLLAALTLAAQAAALPCQPGAYAGPDGRFMVVMERPDTAQTGAWRWWADDGRFGLTNDGS
VVCRGDTLDVKQVVYKKVALRLTPSKFKSGDLTLNGLLIEPPAAPGRKPPLTVLVHGSER
YSAVKGASYPWLLAAQGIAAFVYDKRGTGESQGTYNQNFHALAGDAAAASKEAKRLAAGR
YSRFGLLGGSQGGWVAPRAANDAGADFVAVGFGLLIDPLEEDASQVAAELTEAGYGADIL
KQAREITDATGNLMAEHFKQGYEQLAAVKARYAGQPWFAKIKGEFTGDVLALDEATLRRE
GAAKFDNLELDWRYDAMGWLRKVKVPQLWVIAAEDREAPPQTTIDRLQTLRREGHDVAIV
RFPDTDHGMVEFTQDAKGERTATRVTDGYFRLLGDWIKGKTRPPYGRGEFLTK