Protein Info for Ga0059261_3510 in Sphingomonas koreensis DSMZ 15582

Annotation: Sortase and related acyltransferases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 165 PF13302: Acetyltransf_3" amino acids 6 to 138 (133 residues), 29.4 bits, see alignment E=3e-10 PF00583: Acetyltransf_1" amino acids 40 to 138 (99 residues), 61.8 bits, see alignment E=1.9e-20 PF13508: Acetyltransf_7" amino acids 54 to 139 (86 residues), 42.6 bits, see alignment E=1.7e-14 PF13673: Acetyltransf_10" amino acids 55 to 143 (89 residues), 29.6 bits, see alignment E=1.5e-10 PF13420: Acetyltransf_4" amino acids 58 to 155 (98 residues), 26.9 bits, see alignment E=1.1e-09

Best Hits

KEGG orthology group: None (inferred from 54% identity to vma:VAB18032_25140)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1L6JE88 at UniProt or InterPro

Protein Sequence (165 amino acids)

>Ga0059261_3510 Sortase and related acyltransferases (Sphingomonas koreensis DSMZ 15582)
VTDPRIRPFEDRDWPAVRAIIDHVVESGTSYTYDSGLSDAAYRALWIGAAPGGTVVAEDM
DGTILGTAKLSRNQHGPGSHIANASFMVAPEARGRGVGRQLGEHIVAWAAAAGFRAMQFN
AVVSDNHSAVALWTSLGFAVIGTVPEGFRHRDGRFADLLIMHRRL