Protein Info for Ga0059261_3247 in Sphingomonas koreensis DSMZ 15582

Annotation: Glycine/D-amino acid oxidases (deaminating)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 367 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF01266: DAO" amino acids 5 to 341 (337 residues), 171.6 bits, see alignment E=3.5e-54 PF13450: NAD_binding_8" amino acids 8 to 45 (38 residues), 23.7 bits, see alignment 4.8e-09

Best Hits

KEGG orthology group: None (inferred from 57% identity to sjp:SJA_C1-24430)

Predicted SEED Role

"Glycine oxidase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WG80 at UniProt or InterPro

Protein Sequence (367 amino acids)

>Ga0059261_3247 Glycine/D-amino acid oxidases (deaminating) (Sphingomonas koreensis DSMZ 15582)
MSRYDIVIIGAGIAGASLAARVSPHARVLMIEAETQPGYHATGRSAAFWSETYGGPDIQP
LSIASHPFLIDPPAEMGGESFLTPRGQLFIAARADRQVLDGFAETFAAAGVTLTETDPAT
RCPGLRPEWSEGLWDPTCSDIDVARLHAAWLALARRGGAELVCSANVTRAKREGHWRVET
RAGMFEGDVLVNAAGAWADPVAQLAGASAIGVTPLRRTMVQLRVDPPATAALPLVTDARD
RFYFKPEAGRLWLSPHDEIPSIPCDAAPDELDVAIAIDKLQSAVDWRIEAVERKWAGLRS
FAPDRKPVYGFDPLVPGLFWCAGQGGFGIQTSPAASALAASMLLGTAPDPSIAQIDPATY
SIRRFRD