Protein Info for Ga0059261_2940 in Sphingomonas koreensis DSMZ 15582

Annotation: TonB dependent receptor/TonB-dependent Receptor Plug Domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 901 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF07715: Plug" amino acids 59 to 165 (107 residues), 63.1 bits, see alignment E=3.3e-21 PF14905: OMP_b-brl_3" amino acids 653 to 877 (225 residues), 30.8 bits, see alignment E=1.7e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WFC7 at UniProt or InterPro

Protein Sequence (901 amino acids)

>Ga0059261_2940 TonB dependent receptor/TonB-dependent Receptor Plug Domain (Sphingomonas koreensis DSMZ 15582)
MKTRDLLFLTTACGLAIAAAPSRAQSSGDAAAQAADAAEDEAPAELVITGSRIDRAGFDA
PTPTTVLSGDALLQGDRPSIAQVLNDLPQFRASTSPVTNFSGTASGSSPADLRGLGTTRT
LTLLNGRRFTGAGDLNTVPQGLISRVEVVTGGASAAWGSGAVGGVVNILLNEKLEGLTIG
AQSGVSSREDAFRYGFDASFGTKFADGAGHFMIGVQYMNDEGVLDRDSRPNLGSTTLFSK
PGGGRVIAQDVNYSNASVGGLITTGVLAGQTFERDGTLRPFRFGSPNDGSSMVGGEGTSL
RDETALSAPYQRLNGYARASFELGDAKLWVDGSYSRMWAEYPFYAESNRGGSSITVSRDN
PFLPKAVRDRLIAANQTSFRMGRVFEDYGYRTFGYTRETIDAAIGIDGSFGGGKWRYSAY
YGHGQLIDDRGYLNQKVDANFTRAIDVVAHPVTGAPICRVALTDPATACRPLNVFGEGNA
DPAAVAYAFSNTAHVRNTTKLDTAAISLRGDPFSLWAGPVSVAIGAEARWESIESSGLDP
ISAARGFTTFNFSELNGGFNVKEGFAEVAVPLLDQDFSKLEFSAAGRYSHYSNTGSVNSW
KLGLTNRVYSELLLRVSRSRDIRSGSLSELFTNRSTTRSTVADGANGSYEIITYGGGNQA
LDPEIGETTTAGVTWSPSSVPGLSLSVDYFDIRIKGAISTLSGQDIITRCANGNTALCGQ
IVRGSDNKIAHIFATFVNLAEYKTHGIDFEASYNLPLSKLSAAWPGTLKFRGLATYVPSL
TTDDGVSKIEYAGEVGEALPFGTPKWRASGSLTYQDQTLSVDARLRYVAGGMWNSALKDL
ENNAIKARTYVDLGARVTVDKLTLSLNVNNLFDVDPPLTTTGQIHYDQIGRYFSTTAKIR
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