Protein Info for Ga0059261_2925 in Sphingomonas koreensis DSMZ 15582

Annotation: DNA replication protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 276 PF01695: IstB_IS21" amino acids 25 to 259 (235 residues), 247.7 bits, see alignment E=1.2e-77 PF00308: Bac_DnaA" amino acids 119 to 215 (97 residues), 30.6 bits, see alignment E=3.2e-11

Best Hits

Swiss-Prot: 38% identical to ISTB_GEOSE: Insertion sequence IS5376 putative ATP-binding protein from Geobacillus stearothermophilus

KEGG orthology group: None (inferred from 86% identity to mdi:p1METDI0014)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (276 amino acids)

>Ga0059261_2925 DNA replication protein (Sphingomonas koreensis DSMZ 15582)
MSRAADDKMPPGTTAGTPQVLLAHHLKQLKLPTVLREYEKLARECARDGVDHTRYLLRLI
ELELIDRERRTVERRIRAARFPAVKSLDTFDFTAIPSLNKMLVLELARCEYILRRENIIA
LGNSGTGKTHAALALGLAACQKGFTVAFTTAAALVNQLLEARDEKRLLKMQRELAAVKLL
IVDELGYVPLSPTGAELLFETFSQRYERGSTIVTSNLPFEDWTQVLGSERLTGALLDRLT
HHVSILTMNGDSYRLKQSAHRRRAARAEQNQATPAD