Protein Info for Ga0059261_2720 in Sphingomonas koreensis DSMZ 15582

Annotation: Arabinose efflux permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 558 transmembrane" amino acids 27 to 46 (20 residues), see Phobius details amino acids 53 to 75 (23 residues), see Phobius details amino acids 86 to 106 (21 residues), see Phobius details amino acids 111 to 132 (22 residues), see Phobius details amino acids 153 to 177 (25 residues), see Phobius details amino acids 190 to 210 (21 residues), see Phobius details amino acids 243 to 265 (23 residues), see Phobius details amino acids 280 to 301 (22 residues), see Phobius details amino acids 310 to 329 (20 residues), see Phobius details amino acids 458 to 482 (25 residues), see Phobius details amino acids 502 to 521 (20 residues), see Phobius details amino acids 527 to 545 (19 residues), see Phobius details PF00083: Sugar_tr" amino acids 16 to 226 (211 residues), 89.9 bits, see alignment E=1.8e-29 amino acids 220 to 328 (109 residues), 23.8 bits, see alignment E=2e-09 amino acids 447 to 555 (109 residues), 30.1 bits, see alignment E=2.4e-11 PF07690: MFS_1" amino acids 21 to 335 (315 residues), 91 bits, see alignment E=7.5e-30

Best Hits

KEGG orthology group: None (inferred from 74% identity to npp:PP1Y_AT25799)

Predicted SEED Role

"putative sugar transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WEQ8 at UniProt or InterPro

Protein Sequence (558 amino acids)

>Ga0059261_2720 Arabinose efflux permease (Sphingomonas koreensis DSMZ 15582)
MTAQPAVAGRNERKVIIASSLGTVFEWYDFYLYGLLATVISAKFFSGVNETTAFILALGA
FAAGFAVRPFGALVFGRLGDVVGRKYTFLVTMGLMGLSTFAVGILPSYASIGVAAPIILV
ALRLVQGLALGGEYGGAATYVAEHAPEGKRGLFTSWIQTTATLGLFAALLVVIGIRTAIG
EAAFADWGWRLPFLVSILLLAVSLWIRLQLAESPVFQKMKEEGTTSKAPFTEAFGQWRNL
RTVLIVLLGAVAGQAVVWYTGQFYALFFLEKTLKVDGATANILIAIALALATPFFVIFGA
LSDRIGRKKIILTGCALAAISYFPTFHALTQAANPALAAAQRQAPVTIMSSNDICSVQFD
PIGGNKFDQSGCDIAKAYLAKSGIPYKSVPATLPPGAPTLKFTTVRVGEEDHPAPDPVGI
APAERAAVIAAYQAELKTALTRAGYPAKADPAAMNKPLIVALLFWLVLLVTAVYGPIAAL
LVEIFPTRIRYTAMSLPYHIGNGWFGGFLPTIAFAMVAATGDIYYGLWYPIIVAVLTLIL
GLLFLPETFRRRIDESAT