Protein Info for Ga0059261_2706 in Sphingomonas koreensis DSMZ 15582

Annotation: CAAX protease self-immunity

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 235 transmembrane" amino acids 6 to 21 (16 residues), see Phobius details amino acids 39 to 58 (20 residues), see Phobius details amino acids 84 to 105 (22 residues), see Phobius details amino acids 132 to 150 (19 residues), see Phobius details amino acids 156 to 177 (22 residues), see Phobius details amino acids 184 to 203 (20 residues), see Phobius details amino acids 209 to 229 (21 residues), see Phobius details PF02517: Rce1-like" amino acids 132 to 220 (89 residues), 53.3 bits, see alignment E=1.3e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1L6J5J3 at UniProt or InterPro

Protein Sequence (235 amino acids)

>Ga0059261_2706 CAAX protease self-immunity (Sphingomonas koreensis DSMZ 15582)
LIHWALLAALIAAYAWYLRGGGVPPQTSRIDRYRRWMRRAPLAFGMTAIAALAIGGRLDA
LTRLPPEFAALAAEARWLAGFEGAAFEAAVLGGLAGGALIGLLLARWRLGRGKPPFSAGD
IERILPRNRSELGWTAALGTAAGIVEELFFRLALPLFATLATGSAPLGFTLATLLFAGAH
RYQGWAGMAFSALAGALLATIYLATGDLWFAMLVHVLLNLNGLVLRPALLRPRSD