Protein Info for Ga0059261_2705 in Sphingomonas koreensis DSMZ 15582

Annotation: putative hydrolase, CocE/NonD family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 623 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details TIGR00976: hydrolase CocE/NonD family protein" amino acids 45 to 593 (549 residues), 271.2 bits, see alignment E=1.2e-84 PF02129: Peptidase_S15" amino acids 48 to 327 (280 residues), 190.4 bits, see alignment E=7.6e-60 PF00326: Peptidase_S9" amino acids 89 to 221 (133 residues), 33.2 bits, see alignment E=5.8e-12 PF08530: PepX_C" amino acids 374 to 606 (233 residues), 94.3 bits, see alignment E=1.6e-30

Best Hits

Predicted SEED Role

"Glutaryl-7-ACA acylase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WEN2 at UniProt or InterPro

Protein Sequence (623 amino acids)

>Ga0059261_2705 putative hydrolase, CocE/NonD family (Sphingomonas koreensis DSMZ 15582)
MYRRTAALLAAALAATALTAPAPARQATTTTPPTAAFTREEIMIPMRDGTRLQTVILRPT
DKAGKLPIILRRTPYGVPNAAPRSTPESMRFLMQDGYILVIQNMRGRYKSEGRFDMSTAL
SPQGSNAPDEASDAYDTIDWLVKNLPGNNGRVGMMGGSYPGYTAAVALARPHPALKAASP
QAAWNDWWMNDDLHRYGAFRLSYLTDWAYGLQNNKNGDDFDYNPGGPPPVDLYDWFLKLG
PVENLDKLHFKGSVPMLTQVIEHPDYDDHWKRQVWTDRLGRTTVPTLHVVGFWDQEDPLG
GWKIYERMEKDDPKGLSMIVAGPWNHGSWRDAGDNLGYIPFGKPSGTEFMRDIEAPFFAY
WLHGKGPRPTGEARIFQSGSWEWKTYAKWPPAESKATSLYLHADGSLSFTAPSGEGCREY
ISDPANPVPYRERPISVTYPSQEWKWWEAADQRFVNGRPDVLTYVSAPLDKDLTVSGAIS
ATLQASTSGTDSDMVVKLIDVLPDDYDRTTPIKALGDYPKTLNGYQLPIAMEVRRGRWLE
SFSTPKPLVPNKVVAWNVPLRDHDHVFRKGHRIMVQVQSSWFPVIDRNPQRFVPNIYKAK
PADFVKATQRVCAGSLVTLPVAG