Protein Info for Ga0059261_2622 in Sphingomonas koreensis DSMZ 15582

Annotation: TonB dependent receptor/TonB-dependent Receptor Plug Domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1012 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details PF07715: Plug" amino acids 63 to 177 (115 residues), 82.7 bits, see alignment E=2.7e-27 PF00593: TonB_dep_Rec" amino acids 436 to 977 (542 residues), 107.1 bits, see alignment E=2.1e-34

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WEF8 at UniProt or InterPro

Protein Sequence (1012 amino acids)

>Ga0059261_2622 TonB dependent receptor/TonB-dependent Receptor Plug Domain (Sphingomonas koreensis DSMZ 15582)
MKVAVLNASRRTRNVLLMTGASAITLLAATAAQAQDSAPASQPAAEAEQEVVVTGSRIAS
PALTSPSPLQVVTAEALENQGVVNVQEALQQNPAVGIPGQSRTTNGASTNPGLATVNLRN
LGADRTLVLIDGRRSVAGVPGTAQVDLSMIPTPFIERVDVLTGGASAVYGSDAVAGVVNF
IYKKKYEGLQLNIQGGISERGDDRQFAVNATYGANFADGRGNIMVYGGYVNEGVVENDGR
DFSRLDYTSLGTTQRVAGNSANNLTAAQNLFTPFYNPSNVGAGGVFVIGSQTNRIINADG
TFRAYNAATDGYNREQYKLLAAPSERYTFAARVNFDVSDAVNVFSEVTYTNVLTKGRMEA
SPMRTDSALGAFPGNGGFYPIEFLVANPTNAADVRRLANPLVPAAVFAAATNRNVNDAIA
SKDLSFLLRTTMFDGGTRTIPTERDNFRVVLGGTVDLGSSWKFDAYYQYGFTKQNQSMSG
LANLYNLAEALQAIPDVFDYNNNGNFTEAVCVNASARAQGCVPINVYGLNADGSSKISAD
AIKYIKTSLSRYSKQQMHVAAANLTGTLFQLPAGPVQVAVGAEYRKEESRDIFDPLTNQA
RNGYVQLTDTAGKFDVKEAYGEIVVPLLSDTPFFENLTLRAAGRMSDYSTVGTFYAWNVG
GEWSPIEDIRFRAVYAHATRAPNIGELFAAPAAGIISITDPCQGITLTTTGTLADNCRAV
PGILANIQANGSFTLTQADLAGVGGLTANNPNIQEETGKTLTLGAVINPRSINALRNLTI
TVDYFDIKLENAISRVAAATVLNKCYREGLPEFCQFVTRRAGASGAYSTGSVEQVVRALV
NSGGSFSRGLDFTLNYKHEVAGGTASLSAAWTHLLKNGFSALTGDPYDNTMGELGTPRDA
VTAGIGWENDKFGFNVSAEYIAPQVLDYENFQTLYRLADGSVPDEKYFRIGSKIYTDMQV
RYTGLEHFEFYLGVKNLFDVERPPVWGGLPGPVNGVYDVIGRRFYTGARIKF