Protein Info for Ga0059261_2329 in Sphingomonas koreensis DSMZ 15582

Annotation: Predicted permease, DMT superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 311 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details transmembrane" amino acids 50 to 66 (17 residues), see Phobius details amino acids 78 to 98 (21 residues), see Phobius details amino acids 106 to 127 (22 residues), see Phobius details amino acids 137 to 155 (19 residues), see Phobius details amino acids 161 to 180 (20 residues), see Phobius details amino acids 192 to 212 (21 residues), see Phobius details amino acids 222 to 242 (21 residues), see Phobius details amino acids 249 to 269 (21 residues), see Phobius details amino acids 275 to 292 (18 residues), see Phobius details PF00892: EamA" amino acids 24 to 150 (127 residues), 31.7 bits, see alignment E=8e-12 amino acids 161 to 292 (132 residues), 63.2 bits, see alignment E=1.4e-21

Best Hits

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WDM4 at UniProt or InterPro

Protein Sequence (311 amino acids)

>Ga0059261_2329 Predicted permease, DMT superfamily (Sphingomonas koreensis DSMZ 15582)
MHDSAPSRKAALQHSGAALPFAALLLGNVALAFGPWFVRAADVGPVAAGFWRLALGVPFL
FAIVMATEGNPLRHAKGLGITLFFAGIAFAADLASWHVGILHTTLANATLFGNSATLMFP
IWGFLIARAWPTRQQGIALALAAAGAVLLLGRSYSLSPQNMIGDLLCLLAGALYTVYFIL
MTRARGAMTPLSALALSSAVGTLPLLLFAIAMGEQIWPHNWGVLVGLALASQVFGQGLLI
YALGHLSPLVVGIGLLSQPIIAGTIGWIVYGERLGVPDFIGAVLVAIALVLVRRGSTSPG
QVATIADEAKP