Protein Info for Ga0059261_2256 in Sphingomonas koreensis DSMZ 15582

Annotation: ammonium transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 489 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 62 to 84 (23 residues), see Phobius details amino acids 96 to 116 (21 residues), see Phobius details amino acids 159 to 180 (22 residues), see Phobius details amino acids 189 to 212 (24 residues), see Phobius details amino acids 232 to 257 (26 residues), see Phobius details amino acids 270 to 289 (20 residues), see Phobius details amino acids 300 to 321 (22 residues), see Phobius details amino acids 332 to 352 (21 residues), see Phobius details amino acids 358 to 376 (19 residues), see Phobius details amino acids 388 to 407 (20 residues), see Phobius details amino acids 439 to 460 (22 residues), see Phobius details TIGR00836: ammonium transporter" amino acids 61 to 487 (427 residues), 423.7 bits, see alignment E=3.8e-131 PF00909: Ammonium_transp" amino acids 63 to 487 (425 residues), 373.2 bits, see alignment E=6.8e-116

Best Hits

KEGG orthology group: K03320, ammonium transporter, Amt family (inferred from 84% identity to sal:Sala_2327)

Predicted SEED Role

"Ammonium transporter" in subsystem Ammonia assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WDH0 at UniProt or InterPro

Protein Sequence (489 amino acids)

>Ga0059261_2256 ammonium transporter (Sphingomonas koreensis DSMZ 15582)
MKGVSMKNGLKLAAGVGATLLAALPAWAQDAAGNVAETVTETASAAAAAFVPTAEMVNKG
DVAWMLVASAFVLMMSVPALALFYGGLVRTKNMLSVLMQVLTIVCVAALVWFAWGYSMTF
TSGGDWNKVVGGFSKVFLKGVDPTTFAATFSNGVYLPEYIFVIFQMTFACITPALIVGAF
AERVKFTPLVIFVVAWLTLAYFPIAHMVWYWAGPDFLHAAPDDSGLLWGWGALDFAGGTV
VHINAGIAGLVGCLVIGPRLGYKSEPMPPHSLVMTMIGASLLWIGWFGFNAGSGLEANAF
GALAFINTFTATAAAGVTWAVIEQIIHKKPSLLGAASGVVAGLVAITPAAGFAHPGTAIL
LGAVASAICFVFVTTVKNKLKYDDTLDVFGIHCVGGIVGAIGTGIVADPAIGGQGWIDYT
APVAKAGAYDMAGQVMTQLWAVGTTVLWTGVVSTVLFLALKHTIGLRPSKEVETEGLDIN
EHGERAYNY