Protein Info for Ga0059261_2040 in Sphingomonas koreensis DSMZ 15582

Annotation: phenylalanyl-tRNA synthetase beta subunit (EC 6.1.1.20)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 803 TIGR00472: phenylalanine--tRNA ligase, beta subunit" amino acids 1 to 802 (802 residues), 687 bits, see alignment E=1.9e-210 PF01588: tRNA_bind" amino acids 45 to 146 (102 residues), 80.8 bits, see alignment E=1.6e-26 PF03483: B3_4" amino acids 213 to 384 (172 residues), 221.7 bits, see alignment E=1.2e-69 PF03484: B5" amino acids 411 to 479 (69 residues), 46.9 bits, see alignment E=6.3e-16 PF17759: tRNA_synthFbeta" amino acids 497 to 690 (194 residues), 162.6 bits, see alignment E=2.4e-51 PF03147: FDX-ACB" amino acids 711 to 802 (92 residues), 80.1 bits, see alignment E=3.3e-26

Best Hits

KEGG orthology group: K01890, phenylalanyl-tRNA synthetase beta chain [EC: 6.1.1.20] (inferred from 70% identity to sjp:SJA_C1-34570)

Predicted SEED Role

"Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)" (EC 6.1.1.20)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 6.1.1.20

Use Curated BLAST to search for 6.1.1.20

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WCW9 at UniProt or InterPro

Protein Sequence (803 amino acids)

>Ga0059261_2040 phenylalanyl-tRNA synthetase beta subunit (EC 6.1.1.20) (Sphingomonas koreensis DSMZ 15582)
MKFTLSWLKEHLDTDATLDQIDEALTRVGLEVEGIENPGEKLAPFRVAKVLTAERHPQAD
KLQVLTVDAGDGVPLQVVCGAPNARAGLVGVLGLPGAVVPANGMVLKVAAVRGVESNGMM
CSTRELELGEDHDGIIELPEDAPIGTSFPDYAGLNDPVFDVSITPNRQDCMGVRGIARDL
AAAGLGTLKPLDATPVKGEGAGPEVRIDAPEGCPAYYGQTVRGVTNGASPDWMQARLKAV
GQRPISALVDITNYVMIDLGRPLHVYDKAKLSGALVVRKAKAGEQVLALNEKTYTLDESI
TVIADDNGVHDIGGIMGGEDTGVSETTTDVVIECAYFDPEHIARAGQKLLLTSDARTRFE
RGVDPAFLEDGIAIATRLVTQICGGGASEVTRVGTLPRVGITTGYDPVLAETLGGLVIPA
GRQKAILESLGFTVEPLDANGDPVGIDAGFDAFRVTAPSWRRDIDGPADLVEEVIRIEGI
DNVPSTPLPRAPGVATPTATPEQKLERRMRRTAASRGLNEAVTWSFIAEKEAAAVGGGAW
TLANPISEDLKVMRPSLLPGLLMAAGRNTKRGATSVRLFEIGRRYLADAEKPTLTALLAG
DKTPRGWANGKAQPFTAYDAKAEALALLEAAGAPVGNLQVMGDAGDAWHPGQSATLRLGP
KTVLAAFGMLHPALLKQFDLDGPVAAVEIFLDAIPAKRSTGFMRPAYTPPALQAVTRDFA
FIVPAELAAGDLVRAVRGADKAVITEARLFDLFTGAGVEEGKKSLAIEVTLQPGEKSFTD
AEIKAVADKVVAAAAKLGATLRG