Protein Info for Ga0059261_2031 in Sphingomonas koreensis DSMZ 15582

Annotation: Phospholipase A1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 368 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF02253: PLA1" amino acids 164 to 366 (203 residues), 84.7 bits, see alignment E=4.3e-28

Best Hits

Predicted SEED Role

"Phospholipase A1 precursor (EC 3.1.1.32, EC 3.1.1.4); Outer membrane phospholipase A"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WCU9 at UniProt or InterPro

Protein Sequence (368 amino acids)

>Ga0059261_2031 Phospholipase A1 (Sphingomonas koreensis DSMZ 15582)
MRSLLLVPLALTAAPALAQVRAVPTQPATEREALRGVEVILLNEGAAPVPAEGPRQIEVT
AADGTRMTLERLPAPAATIAPGGFAKARYVPVAYAARPAPSTAGELPPGVGSAYPADARA
AASAAAANADGETEVRGSAGTASGFLARFAPHEPIYGAFGAGDSGTKLQFSFAFQPFSNE
SALSGFKFAYTQTMFWRLDLPSGPFEHTTYSPEIFYEKAVDETATFGIGWRHDSNGEGPA
TSIDSNRIFARFTKAFDLGGNWRAEVTPQAWIYVGKQGVAPDLNRYWGNASLGLTVVKPD
SLKLSLNVRGDFETGRGAAELFASYPLADLGGGFGLYLFGQGFTGHGEALDDFRRRDTHG
RIGISLTR