Protein Info for Ga0059261_1782 in Sphingomonas koreensis DSMZ 15582

Annotation: Transposase DDE domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 92 transmembrane" amino acids 68 to 85 (18 residues), see Phobius details PF01609: DDE_Tnp_1" amino acids 1 to 82 (82 residues), 35.3 bits, see alignment E=1.1e-12 PF13586: DDE_Tnp_1_2" amino acids 1 to 86 (86 residues), 54 bits, see alignment E=2e-18

Best Hits

KEGG orthology group: K07492, putative transposase (inferred from 92% identity to mlo:msr1956)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (92 amino acids)

>Ga0059261_1782 Transposase DDE domain (Sphingomonas koreensis DSMZ 15582)
VLADKAYDADRIREMIQDQGATPNIPPKSNRKWKPCFSKRLYRERNLIERFFSKLKHFRR
VATRYDKLAANFLAMVQLASMRLWLRAYESTA