Protein Info for Ga0059261_1650 in Sphingomonas koreensis DSMZ 15582

Annotation: Beta-lactamase class C and other penicillin binding proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 451 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF00144: Beta-lactamase" amino acids 38 to 343 (306 residues), 192.2 bits, see alignment E=1.4e-60 PF13354: Beta-lactamase2" amino acids 63 to 106 (44 residues), 25.7 bits, see alignment 7.2e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WBT8 at UniProt or InterPro

Protein Sequence (451 amino acids)

>Ga0059261_1650 Beta-lactamase class C and other penicillin binding proteins (Sphingomonas koreensis DSMZ 15582)
MKFGVMMLPLAAMAAWPASAADPAAPARIRAALGVPDGAQPGCAVGIFRAGKPAELVNAG
LADVATGRAIGSDTQFYAASVSKQFTAVAVLQQVAAGKVKLTDSVRKYIPELAPYADKVT
VQMLLNMTGGVRDSLSLLALEGYDRISAPTRKQALEAVYRQQDAKFEPGTQYDYTNGGYL
LLSEIVERAAGQPFETYVNAKVLKPLGMTRSFMLLGSRATDPDVAKGYVAKDGKVTDADE
YPLFGGSGGLITTVNDLAKWDADIDNGHKVWTAQISKWMAEPGKFLNGAPAMRTGRGIAY
GNALLIGNRWFHHTGGAVGFKTLYGHLREKRMGVALLCNNGAVDPVPQADKVVAALNEGL
PAIGEPSADGSAINGSYRNVNLAGTYWLAMKGDALEVVVAQADGSRAPAKLLKRAPDGSF
KNEMLSLTPDDDARGFTLEIPRVTLHFSRTT