Protein Info for Ga0059261_1494 in Sphingomonas koreensis DSMZ 15582

Annotation: Transposase DDE domain group 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 456 PF13701: DDE_Tnp_1_4" amino acids 19 to 453 (435 residues), 552.6 bits, see alignment E=4.3e-170 PF01609: DDE_Tnp_1" amino acids 158 to 390 (233 residues), 96.2 bits, see alignment E=2.3e-31

Best Hits

KEGG orthology group: None (inferred from 89% identity to sjp:SJA_C1-07010)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (456 amino acids)

>Ga0059261_1494 Transposase DDE domain group 1 (Sphingomonas koreensis DSMZ 15582)
MPQATPAESEDNALGFSFPAIGGKKLTAAFDGGRLTSDGGVLLLAQAERAMGICRRLAAC
IADPRDPARVIHRLDDILRARTFAIACGYEDADDLDALRDDPGFRLALGKLPGSGAGLAS
QPTMSRWENAPTTRELARMMGAMIDIYCASYPAPPAAVTLDIDDTCDVVHGYQQLSFWNG
HHGERCFLPIHVYDTATGRPVAMLLRTGKTPSGAEAAGHIRRLVRHIRRHWPDTHITIRG
DGHYGRPEVMAFCEAHRVDYVFGLPTNAALRADPVIVAAADACAVKRAQRQYPVLRNYAE
TRYGAKSWKCRRRVVARIEASTLGMDIRYVVTSLQDGSAEHIYDTLYCARGQAENLIKRH
KSQLASDRTSCRSANANQMRLILHTAAYWLMWRIQQAIPKATALAAAEFATLRLRLLKVA
ARVIESASRIRIAFASACPDASVFKDIATSFRPTPT