Protein Info for Ga0059261_1436 in Sphingomonas koreensis DSMZ 15582

Annotation: TonB dependent receptor/TonB-dependent Receptor Plug Domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1025 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details amino acids 35 to 48 (14 residues), see Phobius details PF07715: Plug" amino acids 80 to 195 (116 residues), 79.7 bits, see alignment E=2.2e-26 PF00593: TonB_dep_Rec" amino acids 424 to 983 (560 residues), 108.1 bits, see alignment E=1.1e-34

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WB59 at UniProt or InterPro

Protein Sequence (1025 amino acids)

>Ga0059261_1436 TonB dependent receptor/TonB-dependent Receptor Plug Domain (Sphingomonas koreensis DSMZ 15582)
MEWGCCAELLLRSATKAENRHDKGCSLMVSFTRTRLLTSTLLLTGAIFVAPAQAQETPAA
ESPAEEVVVTGTLIQRPDLEISSPVTVVGAEEISFKQPNTAEDLLRDLPAVRPALGPAVN
NGGDGSSQVDLRGLNQAGTNTSQRTLVLLDGRRIVPFGLDGFTDLNNIPIALVERVDVVT
GGASTVYGADAVAGAVNFVTKRDFRGIDVSTNYRIAERGDGMQFRADLVMGAGFDDDRGN
VVLAFGYTDRKPVFSTNREVGRFPRSITNGNFQGATAAVPTILQGSPSNAALGLAPGDFG
AVFDPALGAFRTGLQSDTYNTNEFQYVQAPLERFNAFVQGRYEITEGIEAYASGMFTRNS
ARIQLASTGTFSNPFVIPISNAYLPVPARNQLCGAIGLTAAQCVAAANATSRNDPNYREV
AASPGRRIVEFGARGNQVDSNMFQMQFGLRGNITETLRYDVFAQYGETTQNQTRENWGSY
SRLQQALLSRRDAAGNPVCYDTSNGCVPINLFGPLGSITTPMLTFIDLDAQIRRVIKQSV
VGANLSGDLFGLKSPFSEKAAAFSVGVERRVLSARSQPDQPSQIQSEVLGTGARIPPDFG
RIEAKEVFGELIIPLVTDAPFFHDLTVEGGIRYSDYSTTGGSTTWKAGGTWEPVQGYKLR
GMYQVAIRSPNIQELYQSPVTGLSNLNPDPCQASQLPSAAANPSLAALCVYTGAPSGTIG
QIPSPTSGQINSTTSGNVNLDVERAKTFTVGAVLQPDFLPGFALTVDYFNIKIEDAISNP
AVGDILNGCYSTTLNPSQTPNAFCDLIRRSPNNGSLNGAGETPGVILSGSNLGKIETAGI
DLGVSYRYSFGEDSALRFSFNGTWLDYYHFQATPNSINRDCTGYYSTNCTNPRAEWKWNT
RLTYSQGIFDVSLMWNHISSVRLEPAALPQAQRPPLNVPQTAGPNPATIFDAYERIPAYN
WFDLSIAAELNENFSMTFGVENLFDKAPPVVGATIGGTAFNNANTFPSIYDTIGRTFSVS
GRLKF