Protein Info for Ga0059261_1285 in Sphingomonas koreensis DSMZ 15582

Annotation: Uncharacterized conserved protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 109 PF02617: ClpS" amino acids 26 to 105 (80 residues), 122.8 bits, see alignment E=2e-40

Best Hits

Swiss-Prot: 77% identical to CLPS_ZYMMO: ATP-dependent Clp protease adapter protein ClpS (clpS) from Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)

KEGG orthology group: K06891, ATP-dependent Clp protease adaptor protein ClpS (inferred from 79% identity to eli:ELI_10185)

Predicted SEED Role

"ATP-dependent Clp protease adaptor protein ClpS" in subsystem Proteolysis in bacteria, ATP-dependent

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1L6J9I5 at UniProt or InterPro

Protein Sequence (109 amino acids)

>Ga0059261_1285 Uncharacterized conserved protein (Sphingomonas koreensis DSMZ 15582)
MADDADRDDDGDASTGVATRTRARTKKPTPYRVLMLNDDYTPMEFVVLVLQRFFKMDMEQ
ATQVMLHVHQRGVGVCGVFTYEVAETKVAQVIDFARQNQHPLQCTLEKA