Protein Info for Ga0059261_1276 in Sphingomonas koreensis DSMZ 15582

Annotation: Pirin-related protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 PF02678: Pirin" amino acids 21 to 126 (106 residues), 109 bits, see alignment E=1.2e-35 PF05726: Pirin_C" amino acids 179 to 277 (99 residues), 76.1 bits, see alignment E=2.5e-25

Best Hits

Swiss-Prot: 47% identical to Y3178_CAUVC: Pirin-like protein CC_3178 (CC_3178) from Caulobacter vibrioides (strain ATCC 19089 / CB15)

KEGG orthology group: K06911, (no description) (inferred from 71% identity to sch:Sphch_2356)

Predicted SEED Role

"Pirin-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8WAV4 at UniProt or InterPro

Protein Sequence (300 amino acids)

>Ga0059261_1276 Pirin-related protein (Sphingomonas koreensis DSMZ 15582)
MMTDDLFTQTILPTTHDLGGFKVHRTLPSRPRTMVGPFIFFDQMGPAHLEVGTGIDVRPH
PHINLATVTYLFAGAIDHRDSIGTFATIEPGAVNLMTAGNGIVHSERSPQSQRDAGPDLS
GIQTWLALPERFEEMDPAFEHVAAADLPVVDSGNARARVIMGSLWGASAPTTTYAGTIYA
DIELAAGASVPIDADADERAIYLAMGQASLDGWELEPQTLYVLRPGIAATLRSASGGRVM
LCGGEAFTTPRHVWWNFVSSDRDRINQAKEDWKAGLFPKVPGDDKEFIPIPEVPKTVSYP