Protein Info for Ga0059261_1165 in Sphingomonas koreensis DSMZ 15582

Annotation: Outer membrane receptor proteins, mostly Fe transport

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 870 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF07715: Plug" amino acids 53 to 159 (107 residues), 49.3 bits, see alignment E=6.5e-17 PF00593: TonB_dep_Rec" amino acids 283 to 835 (553 residues), 109.4 bits, see alignment E=4.3e-35

Best Hits

KEGG orthology group: None (inferred from 81% identity to npp:PP1Y_AT36266)

Predicted SEED Role

"Outer membrane receptor proteins, mostly Fe transport" in subsystem Hemin transport system

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1L6JAN9 at UniProt or InterPro

Protein Sequence (870 amino acids)

>Ga0059261_1165 Outer membrane receptor proteins, mostly Fe transport (Sphingomonas koreensis DSMZ 15582)
MNRGIFTRSALLMLLSSAAAMPAYAQDRPAAGPAVEESDETVVVTANRREENLQDVSGVV
QAFSADQLRQDGIAELRQLQAAVPGLSIANQEGNVEIFIRGVGSANSTELGDPGAAPHLN
GTYIPRPRGLGLMFYDLERVEVNKGPQGTLYGRNALAGTLNIITAKPRLGQYGGYAQAEV
SNRSSYAAEGAINIPLGETFALRAAGYYVNRDYGFKNVSTGAPAKDLKPAGLEENYAGRL
SLLWEPSDRLTVSIVGDYGKETGTGYPGANIFSAVMGSGLRPDQLDLKRVVYRGLQGEME
NELWGVQGKISYDFGSFSAEVTGSYRSVDFYQVNASSDGIDYPGRDLSAVQYDNFSGNFW
QTRSKSQVYEARLFADEDQRLRWNVGGFYFKEDQAVGYLALADRGYCCYSGTEFTMPDVD
GESFAFYADGTFDVTARLRVLAGIRYTEEKKSRYGIGGNWALTLGGAGDACCFATRIGTE
GFRPALLDRPNFNVSGITTRQGMAQFLIEGVKTPGLRDTLIAQIGSIANGTNPNGTCIDR
PDIDNGFVDCPASGSFSYANLTIPGQQSGSSKFDFIDWRAGVEFDITDDNMVYAKVSTAH
KSGGFNDSFNASPIPETFSPEKLLVYEVGSRNSFDLFGRRSVFNLTGFYYDYTNQVFQDL
TCINLDSTQTPPVCNGYSLVNRNIGASRIYGAEAELRLKLPGHFGLDLNAAYLDTRITRG
TVADARAQDHSAGGNSPLISLVGNRLPLASKMNLSARLSQWFDAGPGRLDWQALINYRSS
YYLSQFNEDDIVFLNGARQTAMQAGFPDRQKGYTTVNLGIGYTIDNFRLEAWASNFLDEE
VSQKALVGSSLNIRFLNDARSYGLRARITF