Protein Info for Ga0059261_1141 in Sphingomonas koreensis DSMZ 15582

Annotation: flagellar motor switch protein FliM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 339 TIGR01397: flagellar motor switch protein FliM" amino acids 40 to 333 (294 residues), 249.4 bits, see alignment E=2.5e-78 PF02154: FliM" amino acids 51 to 241 (191 residues), 177.2 bits, see alignment E=3.7e-56 PF01052: FliMN_C" amino acids 263 to 329 (67 residues), 57.5 bits, see alignment E=1e-19

Best Hits

Swiss-Prot: 49% identical to FLIM_CAUVN: Flagellar motor switch protein FliM (fliM) from Caulobacter vibrioides (strain NA1000 / CB15N)

KEGG orthology group: K02416, flagellar motor switch protein FliM (inferred from 50% identity to rru:Rru_A2840)

Predicted SEED Role

"Flagellar motor switch protein FliM" in subsystem Bacterial Chemotaxis or Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1L6J9D1 at UniProt or InterPro

Protein Sequence (339 amino acids)

>Ga0059261_1141 flagellar motor switch protein FliM (Sphingomonas koreensis DSMZ 15582)
MSDDFDDFVLPDPPKMAPGEGDTFDQAGIDALFGFPDAAQQQPKSGLKAVIESNVISYER
LPMLEVVCERMVRTFATSMRNLTSDAIDVTLEEITSTRFGEFMSHVALPAMFGVFKVREW
ENFGVVTVDSGLIYAVVDALLGGRRGNAPLKVEGRAFTTIETQLVWKMVELALEELSRSF
EAVEPVTMELERIEASPRFAAIAGPSNITAVATFRVDMEGRGGKFSVLLPYATLEPVRTK
LLQRFMGEKLGRDRIWETHMASELMSTAVTVDVVLGEKLMPLREVTGLKVGQTISLNRGP
DDALQVQCGGMPLGQAHIGQRSQNIAIRMATDISKGYSR