Protein Info for Ga0059261_0764 in Sphingomonas koreensis DSMZ 15582

Annotation: TonB dependent receptor/Secretin and TonB N terminus short domain/TonB-dependent Receptor Plug Domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1131 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF07660: STN" amino acids 50 to 100 (51 residues), 42.6 bits, see alignment (E = 6.4e-15) PF07715: Plug" amino acids 151 to 264 (114 residues), 61.6 bits, see alignment E=1.4e-20 PF00593: TonB_dep_Rec" amino acids 558 to 1091 (534 residues), 100.6 bits, see alignment E=2.9e-32

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8W9D6 at UniProt or InterPro

Protein Sequence (1131 amino acids)

>Ga0059261_0764 TonB dependent receptor/Secretin and TonB N terminus short domain/TonB-dependent Receptor Plug Domain (Sphingomonas koreensis DSMZ 15582)
MGGITRNAFMAGTAIICAMATPAQAQEKRFDVPAQAARSAIVTLARQADVQIIASRGDTR
GKQANAVKGTMSVEQALARMLRGTGLVARRSSGQTFVVTRERAQPVPASTSATAPRAAPE
PVSQVEPEATPAVESGEVIVTGSRIRRESFDTASPVTALGGEEISESGRTELSEVIAELP
SVSSTLNDRRNSGDVQNDGLSSVQLRSLSDNRTLVLVDGRRTVSNSANANRVSLSTIPNG
FVSRVDIITGGTSSVYGSDAVAGVVNIITESKKTGLRLGARTEFTDAGGGREHEFDASFG
TKFADGRGYFLISGSYDRQDPIRANQRAFALTQWEYDWDPALGGINEYETLYTDATGIPT
SGDRPIGTFPPNKPADLSSSIPGGVFYGSSSARDRFYRGGTLVPLGPDVQTGGVVNVGTS
DAGNSGYFLPNRDGYSTRDVRWISGERERYLGAAKFDFEISDKTSIFAQVQYSKVKTLNF
REPSAITADDTFPVIDRVTGVGSEVTLGRIPCQRATGTGSGPCNPFVPAEIRADVTTGSA
NRGVYFTRRLIELGPQATYNDRETVRSWFGARGDAWGNWKWETSFAYGQFVQDQVRAGEI
NGLRLKQALDATTVNGQIVCRDTSNGCVPINLFGEGSITPEAAAFIKADLRQRATLKQHS
FSGFLTGDLFDLPAGPVGAAFGIEYRKDSQKIEGDDYSRFGGTSGPPVPNFGGSISVFEG
YAEVNAPLVNDKPGIELLSVDASARVGTYDIKNVGTVFSFRGGVQYAPVKDIRFRASFAR
AQRAPDLTELFSPPRGDFDDISDICDGVTPTTAGRIAANCRANPGIQALFASQAASGSPQ
VFDQSGTSVFSPNAGNLALKEETADTFTLGAVVTPSFLKRFTLSVDYYDIRIKDAITAYG
NQAILTQCYDSDLPASANPFCGDITRNPNNGQLSGVTQREFNLAGFKTSGIDVAAEYRFD
FDGIGIPGKWSVRYDATHLLKYETSFIGLTGLVTTDERGELVSGTFKYRARGSLSWRHEG
LSLRWTAVYYGKIYDSLTRLNDYRTFKASNPNAEYPLFLNIPAVWQHNVYAGYSFKVRDA
KLRLYGGVTNLFDKTSPLLPAGDVLSGSTNNYNPTYDVAGRRFYMGLSLDF