Protein Info for Ga0059261_0649 in Sphingomonas koreensis DSMZ 15582

Annotation: yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 469 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details TIGR00197: YjeF family N-terminal domain" amino acids 12 to 209 (198 residues), 130.9 bits, see alignment E=4.9e-42 PF03853: YjeF_N" amino acids 32 to 186 (155 residues), 121.2 bits, see alignment E=4.6e-39 TIGR00196: YjeF family C-terminal domain" amino acids 227 to 464 (238 residues), 160.8 bits, see alignment E=4.4e-51 PF01256: Carb_kinase" amino acids 240 to 450 (211 residues), 155.7 bits, see alignment E=1.5e-49

Best Hits

Predicted SEED Role

"NAD(P)HX epimerase / NAD(P)HX dehydratase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8W8Z3 at UniProt or InterPro

Protein Sequence (469 amino acids)

>Ga0059261_0649 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region (Sphingomonas koreensis DSMZ 15582)
MLDRAVLGAPILTAAQMRAAEDRAIAGGASVASLMERAGTGVAEWVHRLAAGAEVLILCG
PGNNGGDGYVAARVLASRGVPVRVAALREPKSEAAVAARAGWTGPVERFPDPMLPHAPVM
VDALFGTGLSRALDAPVADAIRALADRARLSVAIDLPSGVDTDTGGDFGQALARFDVTLA
LGALKPAHLLQPAAALCGTVCTIEIGLPPEGGAGDTRALAVPRLAAPDATSHKYSRGMVA
VVSGRMHGASELAALAAYRAGAGYVLLLTGGLPHPPHAIVRQRWSEDALDDKRIGAVVIG
PGLGRDDRARDKLDAALASPHPLVIDGDALHLLDLDRLRDRDAPAVLTPHAGEFAALFGE
GQGSKIARAQEAARRSGAVVVFKGADTVIAAPDGPANVALPASPWLSVAGTGDVLAGAIA
TMFAQTPSTPFEAASAGVWLHAEAARLLDRCFLADDLADALPLALERAR