Protein Info for Ga0059261_0434 in Sphingomonas koreensis DSMZ 15582

Annotation: Major Facilitator Superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 472 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 48 to 67 (20 residues), see Phobius details amino acids 79 to 97 (19 residues), see Phobius details amino acids 109 to 129 (21 residues), see Phobius details amino acids 140 to 161 (22 residues), see Phobius details amino acids 167 to 189 (23 residues), see Phobius details amino acids 201 to 219 (19 residues), see Phobius details amino acids 231 to 251 (21 residues), see Phobius details amino acids 270 to 291 (22 residues), see Phobius details amino acids 298 to 322 (25 residues), see Phobius details amino acids 334 to 352 (19 residues), see Phobius details amino acids 358 to 378 (21 residues), see Phobius details amino acids 399 to 420 (22 residues), see Phobius details amino acids 438 to 460 (23 residues), see Phobius details PF07690: MFS_1" amino acids 17 to 411 (395 residues), 158.3 bits, see alignment E=1.3e-50

Best Hits

KEGG orthology group: None (inferred from 59% identity to sro:Sros_3703)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8W8I1 at UniProt or InterPro

Protein Sequence (472 amino acids)

>Ga0059261_0434 Major Facilitator Superfamily (Sphingomonas koreensis DSMZ 15582)
MQDFIPDPKRWAALALLCAAQFIVILDTSIIGVALPAMQADLGFSASGLSWIFNAYVIAF
GGLLLLGGRLGDLIGARRIFAIGFGILTMASLLAGLAQDQEMLLAGRALQGVGAALIAPS
ALTILMRLFGHDGAELGKAFGFWGAAAAAGGSAGVFLGGVITEWMTWPWTFLINVPLGLL
VLALVPAILPTSSRSTGAVDWFGAISVTGALVVLVYAIVTIETAGLGSSQMLTMLGISLA
LFVVFLIAQFVRREPLLPLDIFKAPNLAAGNFVMALLGASWIPLWFFLNLYLQQVLGLSA
LASGLALLPMTVTIMIVMVGLSGKLIGRFGIKPNLVLGLVLMSVALLMFSNLPLDGSFVA
NVLPASLLAALGMALAYIPTTMTGMAGAKPAETGLASGLINTTYQIGSAIGLAIMVALSS
AHADRGTEQTTEAMLAGFQAAFLGAGVAAGIAAFAALVFVGSAGQQKDVPVG