Protein Info for Ga0059261_0328 in Sphingomonas koreensis DSMZ 15582
Annotation: Deacetylases, including yeast histone deacetylase and acetoin utilization protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 46% identical to Y1628_SYNP2: Uncharacterized protein SYNPCC7002_A1628 (SYNPCC7002_A1628) from Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6)
KEGG orthology group: None (inferred from 66% identity to swi:Swit_3915)Predicted SEED Role
"Deacetylases, including yeast histone deacetylase and acetoin utilization protein" in subsystem Hydantoin metabolism
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A1L6JGN2 at UniProt or InterPro
Protein Sequence (295 amino acids)
>Ga0059261_0328 Deacetylases, including yeast histone deacetylase and acetoin utilization protein (Sphingomonas koreensis DSMZ 15582) VPIPVVHHPLYVAPAPARSQYQWNKNGLVRDLLRDSSASLDWHEPEPMPRAWIEAVHDPD YVAEVIETRVPREKERRIGFPVTEAVALRALAVPGGTYLAAKLAQRHGFAANTAGGSHHA LHDTGAGYCVFNDLAIAANRLAEEGERVLIVDCDVHQGDGTAALMAGRGDVATYSIHAEK NFPVRKARSTLDVGLPDGTDDVAYMDALTTSLPALVEDFAPTLILYQAGVDPWEGDRLGR LKLSREGLVVRDKWVASLARARGVPLASALGGGYGVDAMEVSARHVASILALGGG