Protein Info for PGA1_c10100 in Phaeobacter inhibens DSM 17395

Annotation: putative glutathione transport system permease protein GsiD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 323 transmembrane" amino acids 50 to 71 (22 residues), see Phobius details amino acids 113 to 138 (26 residues), see Phobius details amino acids 150 to 168 (19 residues), see Phobius details amino acids 180 to 202 (23 residues), see Phobius details amino acids 237 to 264 (28 residues), see Phobius details amino acids 291 to 309 (19 residues), see Phobius details PF12911: OppC_N" amino acids 35 to 87 (53 residues), 49.5 bits, see alignment 3.3e-17 PF00528: BPD_transp_1" amino acids 128 to 321 (194 residues), 93.8 bits, see alignment E=1.1e-30

Best Hits

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 84% identity to sil:SPO2816)

Predicted SEED Role

"Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EKJ5 at UniProt or InterPro

Protein Sequence (323 amino acids)

>PGA1_c10100 putative glutathione transport system permease protein GsiD (Phaeobacter inhibens DSM 17395)
MTDKDRLVPDEGIAPASTALPAAGVMEELDQPPRSQWLDVWDQFKSHKGAMLGGALFLLI
VLTVYLGPFFWDIDATRIDIRARNQGPSWAHPFGTDQLGRDMLARMMAGGATSVSVGLTA
MLLALFLGSLVGVMAGFFKRLDGPLMRLTDLFLALPLLPLLLVMMLLFREPLNATFGPEQ
GIFILIVASIGITSWMPTARIVRGDVLAIKEREFVLAARSIGTTNTKLISRHILPNVLSP
IMVSATLGIATAIITESALSFLGLGFPPDFPTWGRLLYDATDYLQQYPERVFWPGMAISM
TVLSVNYLGDGLRDALDPRIRGR