Protein Info for PGA1_c10090 in Phaeobacter inhibens DSM 17395

Annotation: YeeE/YedE family (DUF395).

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 357 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 52 to 75 (24 residues), see Phobius details amino acids 86 to 109 (24 residues), see Phobius details amino acids 121 to 142 (22 residues), see Phobius details amino acids 162 to 185 (24 residues), see Phobius details amino acids 192 to 216 (25 residues), see Phobius details amino acids 245 to 268 (24 residues), see Phobius details amino acids 289 to 310 (22 residues), see Phobius details amino acids 316 to 338 (23 residues), see Phobius details PF04143: Sulf_transp" amino acids 35 to 331 (297 residues), 176 bits, see alignment E=7e-56

Best Hits

KEGG orthology group: None (inferred from 72% identity to sil:SPO2817)

Predicted SEED Role

"YeeE/YedE family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EVD0 at UniProt or InterPro

Protein Sequence (357 amino acids)

>PGA1_c10090 YeeE/YedE family (DUF395). (Phaeobacter inhibens DSM 17395)
MFETLGFEDTTARAVSVLFALGLGILFGGLAQLTRFCFRRAVVGEDRRQAAGVWAMALAV
AVLGTQAGVALGWISFAEHRLMVADLPIAAVILGGVMFGVGMVLTRGCVSRLMVLTGSGN
LRALVVIVTFAIVAHATLKGVLAPLRTWIGGVTLPVGDYASLATLTGAPLVVAAVIAAAA
LVLALRSGNRALPLLGGALIGALVPLAWVGTGYVLFDEFDPIAMESLSFTAPSAETLFYT
LASSAVPAGFGTGLVGGVLIGALVAALLSGSFQWQSFESPRQTGRYLSGAVLMGIGGVLA
GGCTVGAGLAGIPTLSLAAVLALVSIAAGGLAADAWINAAASGSDAQRATPAVQPAE